CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90706	Canola	cytosol	95.64	95.64
CDY05037	Canola	nucleus	14.71	75.0
CDY41928	Canola	cytosol	24.8	72.8
CDY50229	Canola	cytosol	70.84	70.46
CDY05043	Canola	cytosol	68.12	69.25
CDX90705	Canola	cytosol, nucleus, plastid	68.12	69.06
CDY05039	Canola	cytosol, nucleus, plastid	67.85	68.98
CDX79811	Canola	cytosol	66.21	68.64
CDY20989	Canola	cytosol	64.85	68.39
CDY05045	Canola	cytosol	24.52	68.18
CDY05044	Canola	nucleus	67.85	67.85
CDY69309	Canola	cytosol	67.85	67.48
CDX90709	Canola	cytosol	61.85	67.36
CDX90710	Canola	cytosol	26.43	66.44
CDY05038	Canola	cytosol	40.6	66.22
CDY27802	Canola	cytosol	64.03	65.83
CDY41927	Canola	cytosol	63.22	64.8
CDY51551	Canola	cytosol	47.96	64.23
CDY41929	Canola	cytosol	31.61	61.38
CDY67336	Canola	cytosol	31.06	57.58
CDY24008	Canola	cytosol	16.62	46.92
CDX76734	Canola	cytosol	42.78	44.99
CDX84843	Canola	cytosol	31.88	44.49
CDX84859	Canola	cytosol	32.7	43.8
CDY28855	Canola	cytosol	10.35	43.68
CDX84860	Canola	cytosol	41.96	43.63
CDX97774	Canola	cytosol	41.14	43.39
CDY47117	Canola	cytosol	42.23	43.3
CDY56521	Canola	cytosol, plastid	42.51	42.74
CDX97775	Canola	mitochondrion	43.6	42.44
CDY17264	Canola	cytosol	35.42	42.35
CDY72582	Canola	mitochondrion	43.32	42.18
CDY66893	Canola	mitochondrion	42.78	41.98
CDY22405	Canola	cytosol, plastid	41.42	41.87
CDX84302	Canola	cytosol	40.6	41.62
CDY64885	Canola	cytosol	16.62	41.5
CDY28882	Canola	cytosol, plastid	19.35	41.04
CDY54214	Canola	cytosol	39.78	41.01
CDX84844	Canola	plasma membrane	38.96	40.86
CDY29702	Canola	cytosol	38.15	40.35
CDX72730	Canola	cytosol	42.78	39.95
CDY02036	Canola	cytosol	31.61	39.59
CDY24010	Canola	plasma membrane	35.42	39.51
CDX74917	Canola	cytosol	37.33	39.37
CDY29700	Canola	cytosol	38.42	39.28
CDY29701	Canola	cytosol	14.44	39.26
CDY17263	Canola	cytosol	37.87	38.72
CDX91425	Canola	cytosol	36.51	38.51
CDY02032	Canola	cytosol	29.7	37.98
CDY24030	Canola	cytosol	41.69	37.05
CDY17265	Canola	cytosol	41.69	36.52
CDY12648	Canola	cytosol	12.53	36.51
CDX74275	Canola	cytosol	34.33	35.8
CDY43958	Canola	cytosol	5.18	33.33
CDX91971	Canola	cytosol	34.88	31.37
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.34	28.37
CDY02035	Canola	cytosol, plastid	13.9	25.76
CDX91970	Canola	cytosol	6.27	16.08
CDX74276	Canola	cytosol	6.27	16.08

Protein Annotations

EnsemblPlants:CDY05040	EnsemblPlantsGene:GSBRNA2T00119790001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY05040	ProteinID:CDY05040.1	SEG:seg
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE02F1	MapMan:35.1	:

Description

BnaC03g28380D

Coordinates

chrLK031959:+:189954..191450

Molecular Weight (calculated)

41642.2 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.192

Length

367 amino acids

Sequence
(BLAST)

001: MSENMEQSPE MLLSPPIPSL PDDVTIDIVA RVPRSHYPTL SLVSKSFRKL IASSKLYKRR SQLGITQRRL YAVLRNRNTG EFSFYVLHRK LNGYNRLVVV
101: RSLPFMSSRG SCVSVGSKVY VFNDLSVLSF DCTSHTVQRG PNFPQRISYK EANVIGKKVY VIGDAFCHYV QGTGWMKVWQ KAVTVFDTET ESLEPKLVKE
201: DMAVGVGPFW SDSVVLEDKI YLKGYMNGNS FVYGPEERKW ELMDEVLNSK DWEGACVVDG VLYYHDRSGK ALMAYDPKQS CWSVVNGLEE FLAVETARSR
301: WSITVNYGAE KLALFFPKKQ YGEKMICCAE IGLERRQGGE IWGKVQWCHV VIGDGSFDMV KCVSVTV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.