CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84844	Canola	plasma membrane	88.15	82.86
CDX84843	Canola	cytosol	56.84	71.1
CDY24008	Canola	cytosol	26.44	66.92
CDY12648	Canola	cytosol	17.93	46.83
CDY05037	Canola	nucleus	10.03	45.83
CDY28882	Canola	cytosol, plastid	22.49	42.77
CDX97774	Canola	cytosol	43.47	41.09
CDY02036	Canola	cytosol	36.17	40.61
CDX84859	Canola	cytosol	33.74	40.51
CDY43958	Canola	cytosol	6.99	40.35
CDX84860	Canola	cytosol	43.16	40.23
CDY47117	Canola	cytosol	43.77	40.22
CDX76734	Canola	cytosol	42.25	39.83
CDY54214	Canola	cytosol	42.86	39.61
CDY41929	Canola	cytosol	22.49	39.15
CDY05045	Canola	cytosol	15.5	38.64
CDY56521	Canola	cytosol, plastid	42.86	38.63
CDY66893	Canola	mitochondrion	43.47	38.24
CDY29700	Canola	cytosol	41.64	38.16
CDY29702	Canola	cytosol	40.12	38.04
CDX97775	Canola	mitochondrion	43.47	37.93
CDY29701	Canola	cytosol	15.5	37.78
CDY72582	Canola	mitochondrion	43.16	37.67
CDY17264	Canola	cytosol	34.65	37.13
CDX90705	Canola	cytosol, nucleus, plastid	40.73	37.02
CDY41927	Canola	cytosol	39.82	36.59
CDY05039	Canola	cytosol, nucleus, plastid	40.12	36.57
CDY05044	Canola	nucleus	40.73	36.51
CDX90710	Canola	cytosol	16.11	36.3
CDY17263	Canola	cytosol	39.51	36.21
CDY17265	Canola	cytosol	45.9	36.04
CDX84302	Canola	cytosol	38.91	35.75
CDY05043	Canola	cytosol	39.21	35.73
CDY02032	Canola	cytosol	31.0	35.54
CDY05040	Canola	cytosol	39.51	35.42
CDX74917	Canola	cytosol	37.39	35.34
CDY51551	Canola	cytosol	29.18	35.04
CDX90709	Canola	cytosol	35.87	35.01
CDY50229	Canola	cytosol	39.21	34.96
CDX91425	Canola	cytosol	36.78	34.77
CDY27802	Canola	cytosol	37.69	34.73
CDY22405	Canola	cytosol, plastid	37.99	34.44
CDY41928	Canola	cytosol	13.07	34.4
CDX90706	Canola	cytosol	38.3	34.33
CDY05038	Canola	cytosol	23.4	34.22
CDY69309	Canola	cytosol	38.3	34.15
CDX79811	Canola	cytosol	36.17	33.62
CDY24030	Canola	cytosol	41.95	33.41
CDX74275	Canola	cytosol	35.56	33.24
CDY20989	Canola	cytosol	34.95	33.05
CDX72730	Canola	cytosol	39.21	32.82
CDY28855	Canola	cytosol	8.51	32.18
CDY64633	Canola	cytosol, nucleus, plasma membrane	28.27	32.18
CDY64885	Canola	cytosol	14.29	31.97
CDY67336	Canola	cytosol	17.93	29.8
CDX91971	Canola	cytosol	36.47	29.41
CDY02035	Canola	cytosol, plastid	15.5	25.76
CDX91970	Canola	cytosol	5.47	12.59
CDX74276	Canola	cytosol	5.47	12.59

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078GC11	EnsemblPlants:CDY24010	ProteinID:CDY24010
ProteinID:CDY24010.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00024527001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EB5FE8

Description

BnaC03g16810DBnaC03g16810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC11]

Coordinates

chrLK032152:+:457787..458830

Molecular Weight (calculated)

38000.2 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.179

Length

329 amino acids

Sequence
(BLAST)

001: MTTQLPEDVI IDILARVPRC NYPRLSLVCK HFRSLIASPM LFAVRSLLGC TELCLYVLLH NRETGGDQRW SILRQKIKDN SRLVLIPSLP VAQRYAAVGS
101: KIYMFDSTKD DSVTTNVLSF DCRSHTVQPL PSIVNVYTTV ADIINGKIYG LGYHNTNSEK PMVVLITETQ TWEPVMTIPE SVYYMWPPNF VMMVGKMYML
201: CPGGSYVYDP KESRWETDEK LKFWVKGTYD PKQRRWEWWK VWNKTKSCSP VSWTKIVGYG RKLALFFCKE EVTRERWGAD ISPERQEIWC AEISLERQEG
301: EGIWGKVEWC DQVMVAGNFI GSKCIAVMV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.