Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021684.1-P | Field mustard | cytosol | 94.83 | 94.83 |
| CDY72582 | Canola | mitochondrion | 62.93 | 58.09 |
| CDX97775 | Canola | mitochondrion | 62.64 | 57.82 |
| CDY66893 | Canola | mitochondrion | 62.07 | 57.75 |
| CDX84860 | Canola | cytosol | 52.3 | 51.56 |
| CDX76734 | Canola | cytosol | 50.86 | 50.72 |
| CDY54214 | Canola | cytosol | 51.15 | 50.0 |
| CDX84859 | Canola | cytosol | 39.08 | 49.63 |
| CDX84843 | Canola | cytosol | 37.36 | 49.43 |
| CDY24008 | Canola | cytosol | 18.1 | 48.46 |
| CDY28855 | Canola | cytosol | 12.07 | 48.28 |
| CDY56521 | Canola | cytosol, plastid | 50.29 | 47.95 |
| CDY29702 | Canola | cytosol | 47.41 | 47.55 |
| CDY28882 | Canola | cytosol, plastid | 23.56 | 47.4 |
| CDY29700 | Canola | cytosol | 48.28 | 46.8 |
| CDY17264 | Canola | cytosol | 41.09 | 46.58 |
| CDX90710 | Canola | cytosol | 19.54 | 46.58 |
| CDY41928 | Canola | cytosol | 16.67 | 46.4 |
| CDX84844 | Canola | plasma membrane | 46.55 | 46.29 |
| CDY47117 | Canola | cytosol | 47.41 | 46.09 |
| CDY02036 | Canola | cytosol | 38.79 | 46.08 |
| CDY05037 | Canola | nucleus | 9.48 | 45.83 |
| CDY12648 | Canola | cytosol | 16.09 | 44.44 |
| CDY43958 | Canola | cytosol | 7.18 | 43.86 |
| CDY24030 | Canola | cytosol | 52.01 | 43.83 |
| CDY17265 | Canola | cytosol | 52.59 | 43.68 |
| CDX84302 | Canola | cytosol | 44.83 | 43.58 |
| CDY05038 | Canola | cytosol | 28.16 | 43.56 |
| CDY24010 | Canola | plasma membrane | 41.09 | 43.47 |
| CDY17263 | Canola | cytosol | 44.83 | 43.45 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 44.54 | 42.94 |
| CDY05043 | Canola | cytosol | 44.54 | 42.94 |
| CDY67336 | Canola | cytosol | 24.43 | 42.93 |
| CDY64885 | Canola | cytosol | 18.1 | 42.86 |
| CDY41927 | Canola | cytosol | 43.39 | 42.18 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 43.68 | 41.99 |
| CDY05044 | Canola | nucleus | 44.25 | 41.96 |
| CDX79811 | Canola | cytosol | 42.53 | 41.81 |
| CDX74917 | Canola | cytosol | 41.67 | 41.67 |
| CDY02032 | Canola | cytosol | 34.2 | 41.46 |
| CDX90709 | Canola | cytosol | 39.94 | 41.25 |
| CDY05040 | Canola | cytosol | 43.39 | 41.14 |
| CDY50229 | Canola | cytosol | 43.39 | 40.92 |
| CDY51551 | Canola | cytosol | 32.18 | 40.88 |
| CDY69309 | Canola | cytosol | 43.1 | 40.65 |
| CDY27802 | Canola | cytosol | 41.67 | 40.62 |
| CDY22405 | Canola | cytosol, plastid | 42.24 | 40.5 |
| CDX90706 | Canola | cytosol | 42.53 | 40.33 |
| CDY29701 | Canola | cytosol | 15.52 | 40.0 |
| CDX91425 | Canola | cytosol | 39.94 | 39.94 |
| CDY20989 | Canola | cytosol | 39.08 | 39.08 |
| CDX72730 | Canola | cytosol | 43.97 | 38.93 |
| CDY41929 | Canola | cytosol | 20.4 | 37.57 |
| CDY05045 | Canola | cytosol | 14.08 | 37.12 |
| CDX74275 | Canola | cytosol | 36.21 | 35.8 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 27.3 | 32.87 |
| CDX91971 | Canola | cytosol | 35.92 | 30.64 |
| CDY02035 | Canola | cytosol, plastid | 16.09 | 28.28 |
| CDX91970 | Canola | cytosol | 7.18 | 17.48 |
| CDX74276 | Canola | cytosol | 7.18 | 17.48 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX97774 | ProteinID:CDX97774 | ProteinID:CDX97774.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00105054001 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_2 | PFAM:PF00646 | PFAM:PF07646 | PFscan:PS50181 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EE7B1B |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g41650D
Coordinates
chrLK031901:-:265349..266395
Molecular Weight (calculated)
40117.1 Da
IEP (calculated)
7.857
GRAVY (calculated)
-0.224
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRNSSEP PSLTASLPHD LVVDILARLS RSDYPALSLV SKHFRSIVSS RELYATRSLL GCMEHCLYVF LADVESKCNR CYILRQKTNG SHGLVLVPSL
101: PSLPYGSRFV AVGSRIYVFG TGKDSNTTLS IDCGSYTVQP LPSMHVPLSY TVADVIDGRI YVMGRHDQRD LDKMMVLVFN TETQTWKTDS EMTTSEIYAH
201: GSVVMADKMY AKYSCKGFVY EPKERKWETD EVLNSKEWRF ACVVDDVLYY YEFYRDKLRA YDRKQRCWLV VKGLEAFFQT SLMWSYVHSV SYDGKLALFF
301: PYGEQIWCAE ISLERSQGGE IWGKVEWCDC LLTSERRFRY TKSLEVFV
101: PSLPYGSRFV AVGSRIYVFG TGKDSNTTLS IDCGSYTVQP LPSMHVPLSY TVADVIDGRI YVMGRHDQRD LDKMMVLVFN TETQTWKTDS EMTTSEIYAH
201: GSVVMADKMY AKYSCKGFVY EPKERKWETD EVLNSKEWRF ACVVDDVLYY YEFYRDKLRA YDRKQRCWLV VKGLEAFFQT SLMWSYVHSV SYDGKLALFF
301: PYGEQIWCAE ISLERSQGGE IWGKVEWCDC LLTSERRFRY TKSLEVFV
001: MKKNKVPTEL IFSLPNDLLV NILARVSRLD YPILSLVSKR FSSVLTLPEL YQTRSLVGLT ENCLYVCLLS SRADRIPSWF KLCRRPILAS DTRKSSGYVL
101: ATIPIPHSPP LHRSSLVAVG SNIYNIGGSI SQSQSSSVSI LDCWSHTWLE GPSMQVEREY PSASLLDGKI YVTGGCRLTF HGCGDQTDNV VVDGKLHSCG
201: GYKGVAYNPN DGRWDSLGSE MNLGLKWSSS CVIENVIYYY YHNENIKWYD TKVRSWRTLN GLKTLPRFAR YANVRLADYG GKMALFWDKF TGCGNQNRMI
301: WCAIIALERR NNEEIWGNVE WSDAVLPHQV PMAYVCEYVV AVNV
101: ATIPIPHSPP LHRSSLVAVG SNIYNIGGSI SQSQSSSVSI LDCWSHTWLE GPSMQVEREY PSASLLDGKI YVTGGCRLTF HGCGDQTDNV VVDGKLHSCG
201: GYKGVAYNPN DGRWDSLGSE MNLGLKWSSS CVIENVIYYY YHNENIKWYD TKVRSWRTLN GLKTLPRFAR YANVRLADYG GKMALFWDKF TGCGNQNRMI
301: WCAIIALERR NNEEIWGNVE WSDAVLPHQV PMAYVCEYVV AVNV
Arabidopsis Description
Putative F-box/kelch-repeat protein At1g19930 [Source:UniProtKB/Swiss-Prot;Acc:Q3ED92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.