Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20989 | Canola | cytosol | 86.18 | 91.38 |
| CDY05037 | Canola | nucleus | 15.18 | 77.78 |
| CDY05040 | Canola | cytosol | 70.46 | 70.84 |
| CDX90706 | Canola | cytosol | 70.19 | 70.57 |
| CDX90710 | Canola | cytosol | 27.91 | 70.55 |
| CDY05044 | Canola | nucleus | 69.38 | 69.75 |
| CDY41928 | Canola | cytosol | 23.58 | 69.6 |
| CDY05043 | Canola | cytosol | 68.02 | 69.53 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 68.02 | 69.34 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 67.48 | 68.98 |
| CDY05045 | Canola | cytosol | 24.66 | 68.94 |
| CDY69309 | Canola | cytosol | 68.83 | 68.83 |
| CDX79811 | Canola | cytosol | 64.5 | 67.23 |
| CDX90709 | Canola | cytosol | 61.25 | 67.06 |
| CDY41927 | Canola | cytosol | 64.77 | 66.76 |
| CDY27802 | Canola | cytosol | 63.14 | 65.27 |
| CDY05038 | Canola | cytosol | 39.02 | 64.0 |
| CDY51551 | Canola | cytosol | 46.88 | 63.14 |
| CDY41929 | Canola | cytosol | 31.98 | 62.43 |
| CDY67336 | Canola | cytosol | 32.25 | 60.1 |
| CDY24008 | Canola | cytosol | 16.8 | 47.69 |
| CDX76734 | Canola | cytosol | 42.28 | 44.7 |
| CDX84843 | Canola | cytosol | 31.71 | 44.49 |
| CDX84860 | Canola | cytosol | 42.28 | 44.19 |
| CDX84859 | Canola | cytosol | 32.79 | 44.16 |
| CDX97775 | Canola | mitochondrion | 44.72 | 43.77 |
| CDY72582 | Canola | mitochondrion | 44.44 | 43.5 |
| CDX97774 | Canola | cytosol | 40.92 | 43.39 |
| CDY66893 | Canola | mitochondrion | 43.9 | 43.32 |
| CDY17264 | Canola | cytosol | 34.69 | 41.69 |
| CDY56521 | Canola | cytosol, plastid | 41.19 | 41.64 |
| CDY47117 | Canola | cytosol | 40.38 | 41.62 |
| CDX84844 | Canola | plasma membrane | 39.02 | 41.14 |
| CDY28882 | Canola | cytosol, plastid | 19.24 | 41.04 |
| CDY29700 | Canola | cytosol | 39.84 | 40.95 |
| CDY29701 | Canola | cytosol | 14.91 | 40.74 |
| CDY22405 | Canola | cytosol, plastid | 39.84 | 40.5 |
| CDY54214 | Canola | cytosol | 39.02 | 40.45 |
| CDY29702 | Canola | cytosol | 37.94 | 40.35 |
| CDY02036 | Canola | cytosol | 31.98 | 40.27 |
| CDY28855 | Canola | cytosol | 9.49 | 40.23 |
| CDX84302 | Canola | cytosol | 39.02 | 40.22 |
| CDY24010 | Canola | plasma membrane | 34.96 | 39.21 |
| CDY17263 | Canola | cytosol | 37.94 | 39.0 |
| CDY12648 | Canola | cytosol | 13.28 | 38.89 |
| CDY64885 | Canola | cytosol | 15.45 | 38.78 |
| CDX74917 | Canola | cytosol | 36.31 | 38.51 |
| CDX91425 | Canola | cytosol | 36.04 | 38.22 |
| CDX72730 | Canola | cytosol | 40.38 | 37.91 |
| CDY02032 | Canola | cytosol | 29.0 | 37.28 |
| CDY17265 | Canola | cytosol | 42.28 | 37.23 |
| CDY24030 | Canola | cytosol | 40.38 | 36.08 |
| CDX74275 | Canola | cytosol | 33.06 | 34.66 |
| CDY43958 | Canola | cytosol | 4.88 | 31.58 |
| CDX91971 | Canola | cytosol | 33.88 | 30.64 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 23.04 | 29.41 |
| CDY02035 | Canola | cytosol, plastid | 14.09 | 26.26 |
| CDX91970 | Canola | cytosol | 5.69 | 14.69 |
| CDX74276 | Canola | cytosol | 5.69 | 14.69 |
Protein Annotations
| EnsemblPlants:CDY50229 | EnsemblPlantsGene:GSBRNA2T00096205001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDY50229 | ProteinID:CDY50229.1 | SMART:SM00256 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EF306E | UniProt:A0A078ILL2 | MapMan:35.1 | : |
Description
BnaC08g14750DBnaC08g14750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILL2]
Coordinates
chrLK032891:-:92748..94852
Molecular Weight (calculated)
41426.0 Da
IEP (calculated)
8.001
GRAVY (calculated)
-0.105
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELMERFSE LSVSPLIPSL PNDVTLDIVA RVPRSHYPTL SLVSKSFRKL IASSKLYKRR SQLGITQHRL FAVLRNSNTG DFNLYILHRK LNCTNRLVLV
101: QSLPTMSSRG SYVPVGSKVY VFNDIDALSI DCTSHTVQPI PDIPQRMSFK VVNAVGKKVY VLGDSFCHVI EESGGWWKGW RKAVTVFDTE TQSWGAKLVK
201: EDMAVGLGPF WSDSVVMEGK VYLKGCINRN SFVYGPVGKK WEVMDEMMNS EDWEGACVVD DVLYYHDCSG KAVLRAFDRK QRCWSVVNGL EEFLAAETSQ
301: SKWCDAVSYG EKKLALFFPK KHEGSKIICC AEIALERRQG GEIWGKMESC DVVVDDGVSE LVKCVAVSV
101: QSLPTMSSRG SYVPVGSKVY VFNDIDALSI DCTSHTVQPI PDIPQRMSFK VVNAVGKKVY VLGDSFCHVI EESGGWWKGW RKAVTVFDTE TQSWGAKLVK
201: EDMAVGLGPF WSDSVVMEGK VYLKGCINRN SFVYGPVGKK WEVMDEMMNS EDWEGACVVD DVLYYHDCSG KAVLRAFDRK QRCWSVVNGL EEFLAAETSQ
301: SKWCDAVSYG EKKLALFFPK KHEGSKIICC AEIALERRQG GEIWGKMESC DVVVDDGVSE LVKCVAVSV
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.