CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97775	Canola	mitochondrion	99.73	99.73
Bra021683.1-P	Field mustard	mitochondrion	97.61	97.61
CDY66893	Canola	mitochondrion	90.98	91.71
CDX97774	Canola	cytosol	58.09	62.93
CDX84860	Canola	cytosol	50.13	53.54
CDX84859	Canola	cytosol	37.67	51.82
CDY54214	Canola	cytosol	47.75	50.56
CDY05037	Canola	nucleus	9.55	50.0
CDX76734	Canola	cytosol	46.15	49.86
CDX84843	Canola	cytosol	34.48	49.43
CDY43958	Canola	cytosol	7.43	49.12
CDX90710	Canola	cytosol	18.83	48.63
CDY28855	Canola	cytosol	11.14	48.28
CDY56521	Canola	cytosol, plastid	46.68	48.22
CDY29702	Canola	cytosol	44.3	48.13
CDY24008	Canola	cytosol	16.45	47.69
CDY12648	Canola	cytosol	15.92	47.62
CDY47117	Canola	cytosol	44.83	47.21
CDY41928	Canola	cytosol	15.65	47.2
CDY02036	Canola	cytosol	36.34	46.76
CDX84844	Canola	plasma membrane	42.97	46.29
CDY05039	Canola	cytosol, nucleus, plastid	44.03	45.98
CDY05043	Canola	cytosol	43.77	45.71
CDY17264	Canola	cytosol	37.14	45.6
CDY29700	Canola	cytosol	43.24	45.4
CDY41927	Canola	cytosol	42.97	45.25
CDX79811	Canola	cytosol	42.18	44.92
CDX84302	Canola	cytosol	42.44	44.69
CDY17263	Canola	cytosol	42.44	44.57
CDY50229	Canola	cytosol	43.5	44.44
CDX90705	Canola	cytosol, nucleus, plastid	42.44	44.2
CDY05044	Canola	nucleus	42.97	44.14
CDY27802	Canola	cytosol	41.64	43.98
CDY28882	Canola	cytosol, plastid	20.16	43.93
CDY41929	Canola	cytosol	22.02	43.92
CDX90709	Canola	cytosol	38.99	43.62
CDY05040	Canola	cytosol	42.18	43.32
CDX90706	Canola	cytosol	42.18	43.32
CDY24010	Canola	plasma membrane	37.67	43.16
CDY05038	Canola	cytosol	25.73	43.11
CDY64885	Canola	cytosol	16.71	42.86
CDX74917	Canola	cytosol	39.52	42.82
CDY51551	Canola	cytosol	31.03	42.7
CDY69309	Canola	cytosol	41.64	42.55
CDY02032	Canola	cytosol	32.36	42.51
CDY24030	Canola	cytosol	46.42	42.37
CDY17265	Canola	cytosol	46.95	42.24
CDY22405	Canola	cytosol, plastid	40.32	41.87
CDY05045	Canola	cytosol	14.59	41.67
CDY20989	Canola	cytosol	38.46	41.67
CDX91425	Canola	cytosol	38.46	41.67
CDX72730	Canola	cytosol	42.97	41.22
CDY29701	Canola	cytosol	14.59	40.74
CDY67336	Canola	cytosol	21.22	40.4
CDX74275	Canola	cytosol	32.89	35.23
CDY02035	Canola	cytosol, plastid	16.71	31.82
CDY64633	Canola	cytosol, nucleus, plasma membrane	23.34	30.45
CDX91971	Canola	cytosol	32.63	30.15
CDX91970	Canola	cytosol	7.16	18.88
CDX74276	Canola	cytosol	7.16	18.88

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078K3U7	EnsemblPlants:CDY72582	ProteinID:CDY72582	ProteinID:CDY72582.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00033687001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE84F5	SEG:seg

Description

BnaAnng41550DBnaAnng41550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K3U7]

Coordinates

chrLK051991:+:143..1276

Molecular Weight (calculated)

43069.6 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.380

Length

377 amino acids

Sequence
(BLAST)

001: MLRRGFLLRS KTSSKTMAPK EVPPSEPPFL TMTSLPHDIV VNILARVSRS HYPKLSLVSK YFRSIVRSRE IYARRSSLGC TEHCLYLILY NLRTKKNRCY
101: ILLRGTTNCS HPRLVLVPSL PALPSRPYPS SFAAVGSKIY MFGDGNDGST ALSIDCESHT VRSLPSMPAP LVYTVANVID GRIYAIGRDD RDLDKMMVVV
201: FNTETQTWEP EKTTADVEAG DMYHGSVVMA GKMYTKDFDS SYVYEPKERK WGTDEVMNSK EWRYGCVVDD VLYYYECEED CEKELRGFDR KERCWRVVKG
301: LEGLLHETRS SLWSQTGSYG GNLALFFPKG DERRGEEIWC AEISLERRQG GEIWGKVEWC NRLVTGFQLT ESLDVVV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.