Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022777.1-P | Field mustard | cytosol | 99.43 | 99.43 |
| CDY24030 | Canola | cytosol | 89.52 | 76.51 |
| CDX84859 | Canola | cytosol | 48.16 | 62.04 |
| CDY28855 | Canola | cytosol | 13.03 | 52.87 |
| CDX97774 | Canola | cytosol | 51.56 | 52.3 |
| CDY72582 | Canola | mitochondrion | 53.54 | 50.13 |
| CDX97775 | Canola | mitochondrion | 53.26 | 49.87 |
| CDY66893 | Canola | mitochondrion | 52.41 | 49.47 |
| CDY56521 | Canola | cytosol, plastid | 50.99 | 49.32 |
| CDY24008 | Canola | cytosol | 18.13 | 49.23 |
| CDY17264 | Canola | cytosol | 42.78 | 49.19 |
| CDY54214 | Canola | cytosol | 48.44 | 48.03 |
| CDX76734 | Canola | cytosol | 47.31 | 47.85 |
| CDY29702 | Canola | cytosol | 47.03 | 47.84 |
| CDX90710 | Canola | cytosol | 19.55 | 47.26 |
| CDY47117 | Canola | cytosol | 47.59 | 46.93 |
| CDX84843 | Canola | cytosol | 34.56 | 46.39 |
| CDY64885 | Canola | cytosol | 19.26 | 46.26 |
| CDX84844 | Canola | plasma membrane | 45.61 | 46.0 |
| CDY29700 | Canola | cytosol | 46.74 | 45.96 |
| CDY05037 | Canola | nucleus | 9.35 | 45.83 |
| CDY28882 | Canola | cytosol, plastid | 22.38 | 45.66 |
| CDY05038 | Canola | cytosol | 28.9 | 45.33 |
| CDY29701 | Canola | cytosol | 17.28 | 45.19 |
| CDY17263 | Canola | cytosol | 45.61 | 44.85 |
| CDX74917 | Canola | cytosol | 44.19 | 44.83 |
| CDX84302 | Canola | cytosol | 44.76 | 44.13 |
| CDY43958 | Canola | cytosol | 7.08 | 43.86 |
| CDX91425 | Canola | cytosol | 43.06 | 43.68 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 44.19 | 43.21 |
| CDY41928 | Canola | cytosol | 15.3 | 43.2 |
| CDY24010 | Canola | plasma membrane | 40.23 | 43.16 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 43.91 | 42.82 |
| CDY02032 | Canola | cytosol | 34.56 | 42.51 |
| CDY05044 | Canola | nucleus | 44.19 | 42.51 |
| CDY51551 | Canola | cytosol | 32.86 | 42.34 |
| CDY50229 | Canola | cytosol | 44.19 | 42.28 |
| CDY17265 | Canola | cytosol | 50.14 | 42.24 |
| CDY05043 | Canola | cytosol | 43.06 | 42.11 |
| CDY02036 | Canola | cytosol | 34.84 | 41.98 |
| CDY05040 | Canola | cytosol | 43.63 | 41.96 |
| CDX90709 | Canola | cytosol | 39.94 | 41.84 |
| CDX79811 | Canola | cytosol | 41.93 | 41.81 |
| CDY22405 | Canola | cytosol, plastid | 42.49 | 41.32 |
| CDY12648 | Canola | cytosol | 14.73 | 41.27 |
| CDX90706 | Canola | cytosol | 42.78 | 41.14 |
| CDY41927 | Canola | cytosol | 41.64 | 41.06 |
| CDY20989 | Canola | cytosol | 39.94 | 40.52 |
| CDY69309 | Canola | cytosol | 42.21 | 40.38 |
| CDX72730 | Canola | cytosol | 44.19 | 39.69 |
| CDY27802 | Canola | cytosol | 39.09 | 38.66 |
| CDY05045 | Canola | cytosol | 14.45 | 38.64 |
| CDY41929 | Canola | cytosol | 20.4 | 38.1 |
| CDY67336 | Canola | cytosol | 21.25 | 37.88 |
| CDX74275 | Canola | cytosol | 36.54 | 36.65 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 26.63 | 32.53 |
| CDX91971 | Canola | cytosol | 36.83 | 31.86 |
| CDY02035 | Canola | cytosol, plastid | 16.15 | 28.79 |
| CDX91970 | Canola | cytosol | 5.67 | 13.99 |
| CDX74276 | Canola | cytosol | 5.67 | 13.99 |
Protein Annotations
| EnsemblPlants:CDX84860 | EnsemblPlantsGene:GSBRNA2T00142177001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF23 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDX84860 | ProteinID:CDX84860.1 | SMART:SM00256 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EE1FF1 | MapMan:35.1 | : | : |
Description
BnaA03g13700D
Coordinates
chrLK031838:-:1589307..1590368
Molecular Weight (calculated)
40620.3 Da
IEP (calculated)
7.055
GRAVY (calculated)
-0.141
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSTTMAKE EQSSKPLSLI TSLPQDVIVD ILARISRFDY PTLSLVCKHF QSIVTSPEIF TRRALLGRTE HCLYVVLCLQ NHTRIYILRK NKTNGDTPLV
101: LIPSLPAMPL YLNFVAAGSR IYAFARKSDY EMMTLSIDCG SHSVQPFPSI PTHLNLIVAG VIEGRIYGVG CRFSEEWEKV MVVFDTKTQV WEPGMISVMK
201: EGFMCGCVVM ADKMYTRDYA NSFVYDPKEN KWEKDEMLNL HKWENACVID DVLYYLDCNE KELRAYDRKR RCWQVVKGLE ALLPETRRRK EWSQTVNYDG
301: KLALFYPKEN CEIWCAEISL ETRQGGEIWG TVECCRHLVT SQSCFMKALD VVV
101: LIPSLPAMPL YLNFVAAGSR IYAFARKSDY EMMTLSIDCG SHSVQPFPSI PTHLNLIVAG VIEGRIYGVG CRFSEEWEKV MVVFDTKTQV WEPGMISVMK
201: EGFMCGCVVM ADKMYTRDYA NSFVYDPKEN KWEKDEMLNL HKWENACVID DVLYYLDCNE KELRAYDRKR RCWQVVKGLE ALLPETRRRK EWSQTVNYDG
301: KLALFYPKEN CEIWCAEISL ETRQGGEIWG TVECCRHLVT SQSCFMKALD VVV
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.