CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90705	Canola	cytosol, nucleus, plastid	90.74	91.99
CDY05038	Canola	cytosol	52.86	86.22
CDX90710	Canola	cytosol	32.15	80.82
CDY05045	Canola	cytosol	28.88	80.3
CDY05037	Canola	nucleus	15.53	79.17
CDY41928	Canola	cytosol	25.34	74.4
CDY50229	Canola	cytosol	69.75	69.38
CDY05039	Canola	cytosol, nucleus, plastid	67.03	68.14
CDY05040	Canola	cytosol	67.85	67.85
CDY05043	Canola	cytosol	66.48	67.59
CDY20989	Canola	cytosol	64.03	67.53
CDY41927	Canola	cytosol	64.31	65.92
CDY69309	Canola	cytosol	65.94	65.58
CDX79811	Canola	cytosol	63.22	65.54
CDX90706	Canola	cytosol	65.4	65.4
CDY27802	Canola	cytosol	63.49	65.27
CDY51551	Canola	cytosol	48.23	64.6
CDX90709	Canola	cytosol	59.13	64.39
CDY41929	Canola	cytosol	32.43	62.96
CDY67336	Canola	cytosol	33.24	61.62
CDY24008	Canola	cytosol	16.62	46.92
CDY28855	Canola	cytosol	10.9	45.98
CDX84859	Canola	cytosol	33.52	44.89
CDX84843	Canola	cytosol	32.15	44.87
CDX97774	Canola	cytosol	41.96	44.25
CDX84860	Canola	cytosol	42.51	44.19
CDX76734	Canola	cytosol	41.14	43.27
CDX97775	Canola	mitochondrion	44.41	43.24
CDY72582	Canola	mitochondrion	44.14	42.97
CDY29702	Canola	cytosol	40.6	42.94
CDY17264	Canola	cytosol	35.69	42.67
CDY29700	Canola	cytosol	41.42	42.34
CDY66893	Canola	mitochondrion	43.05	42.25
CDY29701	Canola	cytosol	15.53	42.22
CDX84302	Canola	cytosol	40.87	41.9
CDX84844	Canola	plasma membrane	39.78	41.71
CDY47117	Canola	cytosol	40.6	41.62
CDY22405	Canola	cytosol, plastid	40.87	41.32
CDY56521	Canola	cytosol, plastid	40.87	41.1
CDY02036	Canola	cytosol	32.7	40.96
CDY64885	Canola	cytosol	16.35	40.82
CDY54214	Canola	cytosol	39.51	40.73
CDY24010	Canola	plasma membrane	36.51	40.73
CDY28882	Canola	cytosol, plastid	18.8	39.88
CDY17263	Canola	cytosol	38.96	39.83
CDY12648	Canola	cytosol	13.62	39.68
CDY02032	Canola	cytosol	30.79	39.37
CDX72730	Canola	cytosol	41.96	39.19
CDX74917	Canola	cytosol	37.06	39.08
CDY43958	Canola	cytosol	5.99	38.6
CDX91425	Canola	cytosol	36.24	38.22
CDY24030	Canola	cytosol	42.78	38.01
CDY17265	Canola	cytosol	43.05	37.71
CDX74275	Canola	cytosol	34.33	35.8
CDX91971	Canola	cytosol	34.33	30.88
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.62	28.72
CDY02035	Canola	cytosol, plastid	14.71	27.27
CDX91970	Canola	cytosol	6.54	16.78
CDX74276	Canola	cytosol	6.54	16.78

Protein Annotations

EnsemblPlants:CDY05044	EnsemblPlantsGene:GSBRNA2T00119794001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDY05044	ProteinID:CDY05044.1	SEG:seg
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE26BB	MapMan:35.1	:

Description

BnaC03g28420D

Coordinates

chrLK031959:-:217037..218140

Molecular Weight (calculated)

41585.2 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.187

Length

367 amino acids

Sequence
(BLAST)

001: MSENMEQFLE LSVSPLIPSL PDDVTLDIVA RVPRSHYPTL SLISKKFRKL IDSPKLYKRR SQLGITQHRL YALLRNRNTG DCRFYILHRK LNSRNRLVIV
101: RSLPPVSSRG SFVSVGSKVY VFNDVDALCI HCASHTVQPI PDMPQRFSAT PMPSKVANVI DGKVYLIGDS RFTFDGGMSW SKTVMVLDAE TQVWEPAMIK
201: EDMWVGALWS DAVVMEDKIC MKGHRNANSF VYEPKEKKWE LMDEVLNSKD WVSACVVDDL LYYHDCSEKA LRAYDPKQSR WSVVSGLEEF LASECAQSKW
301: SNAVKCGEKK LALFFPEKHD GKQVICCAEI ALERRQGGEV WGKMESCDVV IEDGGLFDVV KCVAVTV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.