CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004072.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY28882	Canola	cytosol, plastid	31.23	65.9
CDX76734	Canola	cytosol	61.37	64.18
CDY54214	Canola	cytosol	62.47	64.04
CDY28855	Canola	cytosol	14.25	59.77
CDY05037	Canola	nucleus	10.41	52.78
CDX84860	Canola	cytosol	49.32	50.99
CDX97774	Canola	cytosol	47.95	50.29
CDY24008	Canola	cytosol	17.81	50.0
CDX84843	Canola	cytosol	35.89	49.81
CDY29702	Canola	cytosol	45.48	47.84
CDX84859	Canola	cytosol	35.89	47.81
CDY43958	Canola	cytosol	7.4	47.37
CDY66893	Canola	mitochondrion	48.49	47.33
CDY17264	Canola	cytosol	39.73	47.23
CDX97775	Canola	mitochondrion	48.49	46.95
CDY29700	Canola	cytosol	46.03	46.8
CDY72582	Canola	mitochondrion	48.22	46.68
CDY47117	Canola	cytosol	45.21	46.09
CDY64885	Canola	cytosol	18.36	45.58
CDX84844	Canola	plasma membrane	43.56	45.43
CDY02036	Canola	cytosol	35.89	44.71
CDY12648	Canola	cytosol	15.34	44.44
CDX84302	Canola	cytosol	43.01	43.85
CDX74917	Canola	cytosol	41.64	43.68
CDX91425	Canola	cytosol	41.64	43.68
CDY02032	Canola	cytosol	34.25	43.55
CDY17263	Canola	cytosol	42.74	43.45
CDY24010	Canola	plasma membrane	38.63	42.86
CDY05040	Canola	cytosol	42.74	42.51
CDY17265	Canola	cytosol	48.77	42.48
CDX90710	Canola	cytosol	16.99	42.47
CDY41928	Canola	cytosol	14.52	42.4
CDY51551	Canola	cytosol	31.23	41.61
CDY29701	Canola	cytosol	15.34	41.48
CDY24030	Canola	cytosol	46.85	41.4
CDY41927	Canola	cytosol	40.55	41.34
CDY50229	Canola	cytosol	41.64	41.19
CDY05044	Canola	nucleus	41.1	40.87
CDY05043	Canola	cytosol	40.27	40.72
CDX90705	Canola	cytosol, nucleus, plastid	40.27	40.61
CDX90706	Canola	cytosol	40.82	40.6
CDY22405	Canola	cytosol, plastid	40.27	40.5
CDY41929	Canola	cytosol	20.82	40.21
CDY05039	Canola	cytosol, nucleus, plastid	39.73	40.17
CDX79811	Canola	cytosol	38.9	40.11
CDY27802	Canola	cytosol	39.18	40.06
CDY69309	Canola	cytosol	40.27	39.84
CDX90709	Canola	cytosol	36.71	39.76
CDX72730	Canola	cytosol	42.74	39.69
CDY05038	Canola	cytosol	24.38	39.56
CDY05045	Canola	cytosol	14.25	39.39
CDY20989	Canola	cytosol	37.53	39.37
CDX74275	Canola	cytosol	36.99	38.35
CDY67336	Canola	cytosol	19.18	35.35
CDY64633	Canola	cytosol, nucleus, plasma membrane	27.4	34.6
CDX91971	Canola	cytosol	37.81	33.82
CDY02035	Canola	cytosol, plastid	12.33	22.73
CDX91970	Canola	cytosol	4.93	12.59
CDX74276	Canola	cytosol	4.93	12.59

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078J2U1	EnsemblPlants:CDY56521	ProteinID:CDY56521
ProteinID:CDY56521.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00019703001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002541378
SEG:seg	:	:	:	:	:

Description

BnaA07g38620DBnaA07g38620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2U1]

Coordinates

chrLK033496:-:21389..22486

Molecular Weight (calculated)

41865.0 Da

IEP (calculated)

9.930

GRAVY (calculated)

-0.295

Length

365 amino acids

Sequence
(BLAST)

001: MSSNIRAEKK QSPSSSPITS LPEDVVVDIL ARVPRRDYPR VSLVSKYFRS LVSSPEIYAR RSSLGCTEHC LYVVLYEKDN DDNMYKRLYM LRQKEKDKGF
101: RPKKKRKRKK DKGLVLIPGL PAMPRYESVA AVGSRIYVFD GINSYIIDCT SHTVQHLPRM PVPLSYTVAG VIGGRVYVFG YRGKSKAMLV FNTETQTWED
201: GMTKPVRKVC DGSLVVMADK MYMTDGIKSF VYDPKESKWE TDKMLSSKFW EYACVVDDVL YYHHFSDNEL IAYDPEHKCW QVVKGVKKVL AKMRRVGYFW
301: AKAVSYAGKL VLFFRKKGVT GEICFAKISV ERREGGQIWG KVVQWCDHGL IAGGFYFTKS LDVVL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.