CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72582	Canola	mitochondrion	99.73	99.73
Bra021683.1-P	Field mustard	mitochondrion	97.35	97.35
CDY66893	Canola	mitochondrion	91.25	91.98
CDX97774	Canola	cytosol	57.82	62.64
CDX84860	Canola	cytosol	49.87	53.26
CDX84859	Canola	cytosol	37.4	51.46
CDY05037	Canola	nucleus	9.81	51.39
CDY54214	Canola	cytosol	48.01	50.84
CDX76734	Canola	cytosol	46.42	50.14
CDX84843	Canola	cytosol	34.75	49.81
CDY43958	Canola	cytosol	7.43	49.12
CDX90710	Canola	cytosol	18.83	48.63
CDY56521	Canola	cytosol, plastid	46.95	48.49
CDY24008	Canola	cytosol	16.71	48.46
CDY29702	Canola	cytosol	44.56	48.41
CDY28855	Canola	cytosol	11.14	48.28
CDY12648	Canola	cytosol	15.92	47.62
CDY41928	Canola	cytosol	15.65	47.2
CDY02036	Canola	cytosol	36.6	47.1
CDY47117	Canola	cytosol	44.56	46.93
CDX84844	Canola	plasma membrane	43.24	46.57
CDY05039	Canola	cytosol, nucleus, plastid	44.3	46.26
CDY05043	Canola	cytosol	44.03	45.98
CDY29700	Canola	cytosol	43.5	45.68
CDY17264	Canola	cytosol	37.14	45.6
CDY41927	Canola	cytosol	43.24	45.53
CDX79811	Canola	cytosol	42.44	45.2
CDY50229	Canola	cytosol	43.77	44.72
CDX84302	Canola	cytosol	42.44	44.69
CDY17263	Canola	cytosol	42.44	44.57
CDY28882	Canola	cytosol, plastid	20.42	44.51
CDX90705	Canola	cytosol, nucleus, plastid	42.71	44.48
CDY41929	Canola	cytosol	22.28	44.44
CDY05044	Canola	nucleus	43.24	44.41
CDY27802	Canola	cytosol	41.91	44.26
CDX90709	Canola	cytosol	39.26	43.92
CDX90706	Canola	cytosol	42.44	43.6
CDY05040	Canola	cytosol	42.44	43.6
CDY24010	Canola	plasma membrane	37.93	43.47
CDY05038	Canola	cytosol	25.73	43.11
CDY51551	Canola	cytosol	31.3	43.07
CDY64885	Canola	cytosol	16.71	42.86
CDY02032	Canola	cytosol	32.63	42.86
CDY69309	Canola	cytosol	41.91	42.82
CDX74917	Canola	cytosol	39.26	42.53
CDY05045	Canola	cytosol	14.85	42.42
CDY17265	Canola	cytosol	46.95	42.24
CDY24030	Canola	cytosol	46.15	42.13
CDY20989	Canola	cytosol	38.73	41.95
CDY22405	Canola	cytosol, plastid	40.05	41.6
CDY29701	Canola	cytosol	14.85	41.48
CDX91425	Canola	cytosol	38.2	41.38
CDX72730	Canola	cytosol	42.71	40.97
CDY67336	Canola	cytosol	21.22	40.4
CDX74275	Canola	cytosol	33.16	35.51
CDY02035	Canola	cytosol, plastid	16.71	31.82
CDX91971	Canola	cytosol	32.89	30.39
CDY64633	Canola	cytosol, nucleus, plasma membrane	23.08	30.1
CDX74276	Canola	cytosol	7.16	18.88
CDX91970	Canola	cytosol	7.16	18.88

Protein Annotations

EnsemblPlants:CDX97775	EnsemblPlantsGene:GSBRNA2T00105055001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX97775	ProteinID:CDX97775.1	SEG:seg
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE1B9D	MapMan:35.1	:

Description

BnaC04g41640D

Coordinates

chrLK031901:-:271278..272411

Molecular Weight (calculated)

43079.6 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.382

Length

377 amino acids

Sequence
(BLAST)

001: MLRRGFLLRS KTSSKTMAPK EVPPSEPPFL TMTSLPHDIV VNILARVPRS HYPKLSLVSK YFRSIVRSRE IYARRSSLGC TEHCLYLILY NLRTKKNRCY
101: ILLRGTTNCS HPRLVLVPSL PALPSRPYPS SFAAVGSKIY MFGDGNDGST ALSIDCESHT VRSLPSMPAP LVYTVANVID GRIYAIGRDD RDLDKMMVVV
201: FNTETQTWEP EKTTADVEAG DMYHGSVVMA GKMYTKDFDS SYVYEPKERK WGTDEVMNSK EWRYGCVVDD VLYYYECEED CEKELRGFDR KERCWRVVKG
301: LEGLLHETRS SLWSQTGSYG GNLALFFPKG DERRGEEIWC AEISLERRQG GEIWGKVEWC NRLVTGFQLT ESLDVVV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.