CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022790.1-P	Field mustard	plasma membrane	87.43	95.62
CDY24010	Canola	plasma membrane	82.86	88.15
CDX84843	Canola	cytosol	55.14	73.38
CDY24008	Canola	cytosol	25.14	67.69
CDY05037	Canola	nucleus	9.71	47.22
CDY12648	Canola	cytosol	16.86	46.83
CDX84859	Canola	cytosol	36.57	46.72
CDX97774	Canola	cytosol	46.29	46.55
CDY02036	Canola	cytosol	38.29	45.73
CDY43958	Canola	cytosol	7.43	45.61
CDX84860	Canola	cytosol	46.0	45.61
CDY54214	Canola	cytosol	46.0	45.22
CDX90710	Canola	cytosol	18.86	45.21
CDX76734	Canola	cytosol	44.86	44.99
CDY28855	Canola	cytosol	11.14	44.83
CDY47117	Canola	cytosol	45.43	44.41
CDY66893	Canola	mitochondrion	46.57	43.58
CDY56521	Canola	cytosol, plastid	45.43	43.56
CDY29702	Canola	cytosol	43.14	43.52
CDY28882	Canola	cytosol, plastid	21.43	43.35
CDX97775	Canola	mitochondrion	46.57	43.24
CDY72582	Canola	mitochondrion	46.29	42.97
CDY29700	Canola	cytosol	43.71	42.62
CDY17263	Canola	cytosol	43.71	42.62
CDY64885	Canola	cytosol	17.71	42.18
CDY17264	Canola	cytosol	36.57	41.69
CDX84302	Canola	cytosol	42.57	41.62
CDY05038	Canola	cytosol	26.57	41.33
CDY41928	Canola	cytosol	14.57	40.8
CDY05039	Canola	cytosol, nucleus, plastid	41.71	40.44
CDX74917	Canola	cytosol	40.0	40.23
CDY41927	Canola	cytosol	40.86	39.94
CDY17265	Canola	cytosol	47.71	39.86
CDY05044	Canola	nucleus	41.71	39.78
CDX90705	Canola	cytosol, nucleus, plastid	41.14	39.78
CDX91425	Canola	cytosol	39.43	39.66
CDY05043	Canola	cytosol	40.86	39.61
CDY05045	Canola	cytosol	14.86	39.39
CDY02032	Canola	cytosol	32.29	39.37
CDX90709	Canola	cytosol	37.71	39.17
CDY41929	Canola	cytosol	21.14	39.15
CDY51551	Canola	cytosol	30.57	39.05
CDY50229	Canola	cytosol	41.14	39.02
CDY05040	Canola	cytosol	40.86	38.96
CDY27802	Canola	cytosol	39.14	38.38
CDY22405	Canola	cytosol, plastid	39.71	38.29
CDX90706	Canola	cytosol	40.0	38.15
CDY24030	Canola	cytosol	44.57	37.77
CDX72730	Canola	cytosol	42.0	37.4
CDY69309	Canola	cytosol	39.43	37.4
CDY20989	Canola	cytosol	37.14	37.36
CDY29701	Canola	cytosol	14.29	37.04
CDX79811	Canola	cytosol	37.14	36.72
CDX74275	Canola	cytosol	36.29	36.08
CDY64633	Canola	cytosol, nucleus, plasma membrane	28.86	34.95
CDY67336	Canola	cytosol	19.71	34.85
CDX91971	Canola	cytosol	37.14	31.86
CDY02035	Canola	cytosol, plastid	16.29	28.79
CDX91970	Canola	cytosol	5.43	13.29
CDX74276	Canola	cytosol	5.43	13.29

Protein Annotations

EnsemblPlants:CDX84844	EnsemblPlantsGene:GSBRNA2T00142160001	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX84844	ProteinID:CDX84844.1
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EE1BEB	MapMan:35.1	:

Description

BnaA03g13860D

Coordinates

chrLK031838:+:1529584..1530636

Molecular Weight (calculated)

39941.2 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.109

Length

350 amino acids

Sequence
(BLAST)

001: MTTQLPEDVI IDILARVPRC NYPRLSLVCK HFRSLIASPM LFAVRSLLGC TELCLYVLLH NRETGGDESW SILRQKTKDN SRLVLIPSLP VAQSYAAVGS
101: KIYIFDSTKD DSMTTNVLSF DCRSHTVQPL PSIDVNVYTT VADTINGKIY VLGYHNTNSE KPMVVLNTET QTWEPVMTIP ETVHYMWPPS FVMMAGKMYT
201: IGGSYVYDPK ESRWETDEKL KFWVKGCVLD DVFYCYDFCV NSLRTYDPKQ RLWGAVKGVE QLLAETKSCS PASWTKIVGY GRKLALFFSK EEMTRERWGV
301: DISLEKQEIW CAEISLERQE GEEIWGKVEW CDQVMVAGNF IGSKCIAVMV

Best Arabidopsis Sequence Match ( AT1G60570.1 )
(BLAST)

001: MSDDEEPPLK KNKLPVEEPT LIPSLPEELI LSILARVSRL SYRSLSLVCK RFHSLLTSGE IYRFRSLSGY TENCLYVCLR FSHTGRSHRW FMLREKNKSS
101: GYVLAPIPIS HSPSLHASSI VAVGSKIYKI GGVMDGSSVS ILDCWSHRWL EAPSMQMERD RPSANLIDGK IYVTGGCHRG SYNPSKWMEV FDLKTETWEP
201: VLCRSDRLTF ESYHERTNNL LVDGKLYIFW ADKGVVYNPK DDTWDSLEVP EMDMCLTLFY CCVIENVLYD FFYEELDIKW YDTKARTWRS LLNGMRELHK
301: FVRHASVTLA DYGGKMVMFW DKFVASGDGL GFHKTMMWCA MIALERSDSG EIWGKVEWFG PVLPNQIPLE YAFEYVGSVK V

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g60570 [Source:UniProtKB/Swiss-Prot;Acc:O22698]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.