Factsheet for Bra022790.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84844	Canola	plasma membrane	95.62	87.43
Bra022791.1-P	Field mustard	cytosol	69.69	64.27
Bra021684.1-P	Field mustard	cytosol	46.56	42.82
Bra022777.1-P	Field mustard	cytosol	46.88	42.49
Bra022778.1-P	Field mustard	cytosol	46.56	41.97
Bra005410.1-P	Field mustard	cytosol	46.88	41.78
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	45.62	41.01
Bra004072.1-P	Field mustard	cytosol, plastid	45.94	40.27
Bra021610.1-P	Field mustard	cytosol	44.69	40.17
Bra021683.1-P	Field mustard	mitochondrion	46.56	39.52
Bra005412.1-P	Field mustard	cytosol	44.06	39.28
Bra022024.1-P	Field mustard	cytosol	19.38	38.99
Bra021607.1-P	Field mustard	cytosol	41.88	38.62
Bra021609.1-P	Field mustard	cytosol	43.44	38.61
Bra033997.1-P	Field mustard	cytosol	26.88	37.07
Bra005142.1-P	Field mustard	cytosol	40.0	36.78
Bra021608.1-P	Field mustard	cytosol	38.44	36.39
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	40.62	35.91
Bra000668.1-P	Field mustard	cytosol	37.19	35.84
Bra039467.1-P	Field mustard	cytosol	38.75	35.13
Bra000669.1-P	Field mustard	cytosol	15.94	34.93
Bra033585.1-P	Field mustard	cytosol, plastid	38.75	34.16
Bra001029.1-P	Field mustard	cytosol	37.5	34.09
Bra000665.1-P	Field mustard	cytosol	39.06	34.06
Bra004774.1-P	Field mustard	cytosol	36.88	33.33
Bra016843.1-P	Field mustard	cytosol	35.94	33.05
Bra020387.1-P	Field mustard	cytosol	37.81	32.79
Bra010511.1-P	Field mustard	cytosol	16.56	28.49
Bra005411.1-P	Field mustard	cytosol	44.38	25.49

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra022790	EnsemblPlants:Bra022790.1	EnsemblPlants:Bra022790.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4E1Z0	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002540232	:

Description

AT4G38940 (E=8e-056) | kelch repeat-containing F-box family protein

Coordinates

chrA03:-:7068296..7069258

Molecular Weight (calculated)

36564.0 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.154

Length

320 amino acids

Sequence
(BLAST)

001: MTTQLPEDVI IDILARVPRC NYPRLSLVCK HFRSLIASPM LFAVRSLLGC TELCLYVLLH NRETGGDESW SILRQKTKDN SRLVLIPSLP VAQSYAAVGS
101: KIYIFDSTKD DSMTTNVLSF DCRSHTVQPL PSIDVNVYTT VADTINGKIY VLGYHNTNSE KPMVVLNTET QTWEPVMTIP ETVHYMWTPS FVMMAGKMYT
201: IGGSYVYDPK ESRWETDEKL KFWVKGCVLD DVFYCYDFCV NSLRTYDPKQ RLWGAVKGVE QLLAETKSCS PASWTKIVGY GRKLALFFSK EEMTRERWGV
301: DISLEKQEIW CAEISQEEGI

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.