Factsheet for Bra005412.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17263	Canola	cytosol	98.05	98.05
Bra005410.1-P	Field mustard	cytosol	57.94	57.94
Bra022777.1-P	Field mustard	cytosol	45.4	46.18
Bra021684.1-P	Field mustard	cytosol	43.73	45.11
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	43.73	44.1
Bra022790.1-P	Field mustard	plasma membrane	39.28	44.06
Bra000669.1-P	Field mustard	cytosol	17.83	43.84
Bra021610.1-P	Field mustard	cytosol	43.18	43.54
Bra022778.1-P	Field mustard	cytosol	42.9	43.38
Bra004072.1-P	Field mustard	cytosol, plastid	44.01	43.29
Bra021607.1-P	Field mustard	cytosol	41.78	43.23
Bra022791.1-P	Field mustard	cytosol	41.5	42.94
Bra022024.1-P	Field mustard	cytosol	18.94	42.77
Bra021683.1-P	Field mustard	mitochondrion	44.01	41.91
Bra021609.1-P	Field mustard	cytosol	41.78	41.67
Bra033997.1-P	Field mustard	cytosol	25.91	40.09
Bra000668.1-P	Field mustard	cytosol	36.49	39.46
Bra021608.1-P	Field mustard	cytosol	36.77	39.05
Bra004774.1-P	Field mustard	cytosol	38.16	38.7
Bra033585.1-P	Field mustard	cytosol, plastid	39.0	38.57
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	38.72	38.4
Bra020387.1-P	Field mustard	cytosol	39.28	38.21
Bra039467.1-P	Field mustard	cytosol	37.33	37.96
Bra000665.1-P	Field mustard	cytosol	38.44	37.6
Bra005142.1-P	Field mustard	cytosol	36.21	37.36
Bra016843.1-P	Field mustard	cytosol	35.93	37.07
Bra005411.1-P	Field mustard	cytosol	57.38	36.98
Bra010511.1-P	Field mustard	cytosol	18.11	34.95
Bra001029.1-P	Field mustard	cytosol	31.75	32.39

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra005412	EnsemblPlants:Bra005412.1	EnsemblPlants:Bra005412.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	UniProt:M4CMH4	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254800F	SEG:seg	:

Description

AT4G38940 (E=3e-052) | kelch repeat-containing F-box family protein

Coordinates

chrA05:-:5360350..5361429

Molecular Weight (calculated)

41339.9 Da

IEP (calculated)

8.651

GRAVY (calculated)

-0.234

Length

359 amino acids

Sequence
(BLAST)

001: MSSSKKEQSP EPPSLIPLLP EDIIIDILSR VRWCDYRTLS LVSKHFRSLV ASHELYTRRS LLGCTVRRLY VALSNRETTS HNPYILCLEA NDNHRLVLIP
101: WPTHVPHVGS FVTVDSKIYA FDMLNRYHHL PIPSIDCRFQ TVHLVHCMNA TMDVSVAGVI DGKIYVTGYT KIPWDTSAKM VMAVFNTETQ IWETATETMI
201: GRPYGCVVMA GKMYTRDGRN SFVYDPKESK WETDKRLNMF KWQGGCVVDD VLYYFDNRGG KVLRAYNPRK SSWVVVKGLE RLVAEGRFSE SYYTGSCDGK
301: LVLFLSKDRM TKGIRCAQIS VERRHHQGRS EIWGKIDWCD DVLFRSDDLF VTKTLDVIL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.