Factsheet for Bra005142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74917	Canola	cytosol	99.14	99.14
Bra022778.1-P	Field mustard	cytosol	45.4	44.51
Bra022777.1-P	Field mustard	cytosol	44.83	44.19
Bra021610.1-P	Field mustard	cytosol	43.97	42.98
Bra005410.1-P	Field mustard	cytosol	43.97	42.62
Bra021684.1-P	Field mustard	cytosol	42.53	42.53
Bra004072.1-P	Field mustard	cytosol, plastid	43.68	41.64
Bra033997.1-P	Field mustard	cytosol	27.59	41.38
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	41.95	41.01
Bra021609.1-P	Field mustard	cytosol	42.24	40.83
Bra021607.1-P	Field mustard	cytosol	39.94	40.06
Bra022790.1-P	Field mustard	plasma membrane	36.78	40.0
Bra000669.1-P	Field mustard	cytosol	16.67	39.73
Bra022791.1-P	Field mustard	cytosol	39.08	39.19
Bra021683.1-P	Field mustard	mitochondrion	42.24	38.99
Bra033585.1-P	Field mustard	cytosol, plastid	39.94	38.29
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	38.79	37.29
Bra020387.1-P	Field mustard	cytosol	39.08	36.86
Bra021608.1-P	Field mustard	cytosol	35.63	36.69
Bra022024.1-P	Field mustard	cytosol	16.67	36.48
Bra000668.1-P	Field mustard	cytosol	34.77	36.45
Bra039467.1-P	Field mustard	cytosol	36.78	36.26
Bra005412.1-P	Field mustard	cytosol	37.36	36.21
Bra004774.1-P	Field mustard	cytosol	36.78	36.16
Bra010511.1-P	Field mustard	cytosol	19.25	36.02
Bra000665.1-P	Field mustard	cytosol	37.64	35.69
Bra001029.1-P	Field mustard	cytosol	34.77	34.38
Bra016843.1-P	Field mustard	cytosol	33.05	33.05
Bra005411.1-P	Field mustard	cytosol	44.25	27.65

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra005142	EnsemblPlants:Bra005142.1	EnsemblPlants:Bra005142.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4CLQ5	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00025477C1	:

Description

AT4G38940 (E=2e-066) | kelch repeat-containing F-box family protein

Coordinates

chrA05:+:3702382..3703428

Molecular Weight (calculated)

40180.5 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.208

Length

348 amino acids

Sequence
(BLAST)

001: MSSPTKPEPT CLIMSLPDEV VVDIIARVST RFHPSISAVC RRFRSLVTSP ELYKARRSLS GCNEHCLYVI LQSFGENSET RVYNLRRKPD GGHRLVLVSS
101: LPAMPHEASF VVDGSRIHVF GGFSLYDRSE RNALSIDCRY HTVQPLPTMP KRMIGTPLAH VMDGKIYVFG YTNYYNKVTA VFNTLTQTWE PEMTKPRIEL
201: RHVLNGPDGY VNSIVYDGTK ETKWETEWML KFNKWKSVCV IDDVFYSYDC LYNKLKAYDT KLRCWSEVKG VKTLLPTNKS LVWWPRVVNY GGSLLFLYQK
301: RICRIEEHWC AEIALERRQD GEIWGKVEWS DVVIVGDFCL IESLVATF

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.