Factsheet for Bra010511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67336	Canola	cytosol	93.01	87.37
Bra000669.1-P	Field mustard	cytosol	40.86	52.05
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	59.68	30.66
Bra039467.1-P	Field mustard	cytosol	56.45	29.75
Bra004774.1-P	Field mustard	cytosol	55.91	29.38
Bra016843.1-P	Field mustard	cytosol	54.84	29.31
Bra022024.1-P	Field mustard	cytosol	24.73	28.93
Bra033997.1-P	Field mustard	cytosol	35.48	28.45
Bra020387.1-P	Field mustard	cytosol	54.3	27.37
Bra000665.1-P	Field mustard	cytosol	51.08	25.89
Bra000668.1-P	Field mustard	cytosol	45.16	25.3
Bra021684.1-P	Field mustard	cytosol	40.86	21.84
Bra022778.1-P	Field mustard	cytosol	40.32	21.13
Bra005410.1-P	Field mustard	cytosol	40.32	20.89
Bra021683.1-P	Field mustard	mitochondrion	41.4	20.42
Bra022777.1-P	Field mustard	cytosol	38.17	20.11
Bra005142.1-P	Field mustard	cytosol	36.02	19.25
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	36.56	19.1
Bra021607.1-P	Field mustard	cytosol	35.48	19.02
Bra033585.1-P	Field mustard	cytosol, plastid	36.56	18.73
Bra004072.1-P	Field mustard	cytosol, plastid	36.56	18.63
Bra022791.1-P	Field mustard	cytosol	33.87	18.16
Bra005412.1-P	Field mustard	cytosol	34.95	18.11
Bra021609.1-P	Field mustard	cytosol	32.8	16.94
Bra021608.1-P	Field mustard	cytosol	30.11	16.57
Bra022790.1-P	Field mustard	plasma membrane	28.49	16.56
Bra021610.1-P	Field mustard	cytosol	30.65	16.01
Bra005411.1-P	Field mustard	cytosol	40.32	13.46
Bra001029.1-P	Field mustard	cytosol	24.73	13.07

Protein Annotations

EnsemblPlants:Bra010511.1	EnsemblPlants:Bra010511.1-P	EnsemblPlantsGene:Bra010511	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SUPFAM:SSF117281	UniParc:UPI0002545E1B
UniProt:M4D211	MapMan:35.2	:	:	:	:

Description

AT4G38940 (E=1e-011) | kelch repeat-containing F-box family protein

Coordinates

chrA08:+:14925553..14926256

Molecular Weight (calculated)

20873.2 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.091

Length

186 amino acids

Sequence
(BLAST)

001: MSPHASFVPV GSKTYVFNDL EALSVDCASH TLKPISDMPQ RMLRKVANVV DGKVYLIAIR VSTLLFTNQR ENKWELMNEV LNSKERWEGA CVIDDVLYYH
101: DPSGEKAFSR WSVVNGLEEF LAAEGTDQSM WSRVVKCGEK KLALFFPKKR DGAEVICCAE IALEWPQGGG VIWGKVLSLR MGGLSW

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.