Factsheet for Bra032070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54214	Canola	cytosol	97.75	97.75
Bra004072.1-P	Field mustard	cytosol, plastid	63.48	61.92
Bra021684.1-P	Field mustard	cytosol	50.0	51.15
Bra022777.1-P	Field mustard	cytosol	48.03	48.44
Bra021683.1-P	Field mustard	mitochondrion	50.0	47.21
Bra005410.1-P	Field mustard	cytosol	47.47	47.08
Bra022778.1-P	Field mustard	cytosol	46.63	46.76
Bra000669.1-P	Field mustard	cytosol	19.1	46.58
Bra021610.1-P	Field mustard	cytosol	46.07	46.07
Bra022790.1-P	Field mustard	plasma membrane	41.01	45.62
Bra022791.1-P	Field mustard	cytosol	44.38	45.53
Bra021609.1-P	Field mustard	cytosol	45.51	45.0
Bra021607.1-P	Field mustard	cytosol	43.54	44.67
Bra005412.1-P	Field mustard	cytosol	44.1	43.73
Bra022024.1-P	Field mustard	cytosol	19.1	42.77
Bra033585.1-P	Field mustard	cytosol, plastid	43.26	42.42
Bra033997.1-P	Field mustard	cytosol	27.53	42.24
Bra005142.1-P	Field mustard	cytosol	41.01	41.95
Bra039467.1-P	Field mustard	cytosol	39.33	39.66
Bra004774.1-P	Field mustard	cytosol	39.33	39.55
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	40.17	39.5
Bra021608.1-P	Field mustard	cytosol	36.8	38.76
Bra020387.1-P	Field mustard	cytosol	39.61	38.21
Bra000665.1-P	Field mustard	cytosol	39.33	38.15
Bra016843.1-P	Field mustard	cytosol	36.52	37.36
Bra000668.1-P	Field mustard	cytosol	34.83	37.35
Bra010511.1-P	Field mustard	cytosol	19.1	36.56
Bra001029.1-P	Field mustard	cytosol	34.27	34.66
Bra005411.1-P	Field mustard	cytosol	48.03	30.7

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra032070	EnsemblPlants:Bra032070.1	EnsemblPlants:Bra032070.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4ETD9	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002544B73	SEG:seg

Description

AT4G38940 (E=4e-068) | kelch repeat-containing F-box family protein

Coordinates

chrA04:-:11094640..11095710

Molecular Weight (calculated)

40258.4 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.139

Length

356 amino acids

Sequence
(BLAST)

001: MSRAERKQSP PPSPITSLPE DVAVDILARL PICDYPRVSL VSKRFRSLVS SPEIYARRRS SPGCTEHCLY VFLYNYANRV NRLYTLRRSN SSSRLVLIPG
101: LPPAIPPYGS FAAVGSRIYV FDGVNSSYTI DCTSHTVQHL PRMPVPLSNT VADVVGGRIY VVGYHDADPK SKAMLEFNTE TQTWKGPMTV PGMQIRDGCV
201: VAMAGKMYIR DFEKSFVYDP EERKWETEEV LSSKCWGESA CVVDDVLFFY DWSDKELRAY DPERKCWQVV KGLDDLLAEI RGVACCWLHT VSYGGRLVLL
301: YGKGEFLYIT KEVCCAEVSL EIRQGGQIWG KVYQWCDDHA LIAGNFIIRK SLDVVL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.