Factsheet for Bra005410.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17265	Canola	cytosol	96.1	82.34
Bra005412.1-P	Field mustard	cytosol	57.94	57.94
Bra021684.1-P	Field mustard	cytosol	51.25	52.87
Bra022778.1-P	Field mustard	cytosol	51.81	52.39
Bra022777.1-P	Field mustard	cytosol	49.86	50.71
Bra000669.1-P	Field mustard	cytosol	20.06	49.32
Bra022791.1-P	Field mustard	cytosol	47.63	49.28
Bra005411.1-P	Field mustard	cytosol	76.32	49.19
Bra004072.1-P	Field mustard	cytosol, plastid	49.58	48.77
Bra021610.1-P	Field mustard	cytosol	48.19	48.6
Bra021609.1-P	Field mustard	cytosol	48.19	48.06
Bra021683.1-P	Field mustard	mitochondrion	50.14	47.75
Bra021607.1-P	Field mustard	cytosol	45.96	47.55
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	47.08	47.47
Bra022790.1-P	Field mustard	plasma membrane	41.78	46.88
Bra021608.1-P	Field mustard	cytosol	44.01	46.75
Bra033997.1-P	Field mustard	cytosol	28.97	44.83
Bra022024.1-P	Field mustard	cytosol	19.78	44.65
Bra005142.1-P	Field mustard	cytosol	42.62	43.97
Bra004774.1-P	Field mustard	cytosol	42.62	43.22
Bra033585.1-P	Field mustard	cytosol, plastid	43.18	42.7
Bra000668.1-P	Field mustard	cytosol	39.28	42.47
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	42.62	42.27
Bra039467.1-P	Field mustard	cytosol	41.23	41.93
Bra020387.1-P	Field mustard	cytosol	42.06	40.92
Bra000665.1-P	Field mustard	cytosol	41.5	40.6
Bra010511.1-P	Field mustard	cytosol	20.89	40.32
Bra016843.1-P	Field mustard	cytosol	38.72	39.94
Bra001029.1-P	Field mustard	cytosol	35.1	35.8

Protein Annotations

EnsemblPlants:Bra005410.1	EnsemblPlants:Bra005410.1-P	EnsemblPlantsGene:Bra005410	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000254800D	UniProt:M4CMH2	MapMan:35.1	:	:

Description

AT4G38940 (E=5e-073) | kelch repeat-containing F-box family protein

Coordinates

chrA05:-:5354302..5355381

Molecular Weight (calculated)

40880.3 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.248

Length

359 amino acids

Sequence
(BLAST)

001: MSSKTRSKKE QSSEPQSLIP SLPEDIIVDI LARVGSCYYP KLSLVSKHFR SLVTSHELYA IRSLLGCTEH SLYVVLCNRE NGNYQLYALR QKANGNHSLV
101: LIPSLPKLPR KGGFVAVGSR IYVFGRFKSI PQNAISIDCR YQTVHPLPSM NVTMSVSVAD IIDGNIYLTG YCSNPTKMVM MVFNTETEMW EPKKTTPETM
201: SGYLWENECV VMAGKMYMSD PSYNFVYDPK ESKWETDKML NMFKWRKARV VDDVLYYYDS GWGVLRAYDP KGSSWVVVNG LEELLADARF SDWSYTGSYG
301: GKLAMIFTKT TGRTEVIRCG EISLERRRQG KEIWGKVEWC DDVLVGGDFY VKKTLDVIV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.