Factsheet for Bra000669.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90710	Canola	cytosol	95.89	95.89
Bra010511.1-P	Field mustard	cytosol	52.05	40.86
Bra022024.1-P	Field mustard	cytosol	37.67	34.59
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	76.71	30.94
Bra016843.1-P	Field mustard	cytosol	71.23	29.89
Bra039467.1-P	Field mustard	cytosol	65.75	27.2
Bra033997.1-P	Field mustard	cytosol	42.47	26.72
Bra004774.1-P	Field mustard	cytosol	61.64	25.42
Bra020387.1-P	Field mustard	cytosol	63.01	24.93
Bra000665.1-P	Field mustard	cytosol	60.96	24.25
Bra000668.1-P	Field mustard	cytosol	48.63	21.39
Bra022778.1-P	Field mustard	cytosol	49.32	20.28
Bra022777.1-P	Field mustard	cytosol	48.63	20.11
Bra005410.1-P	Field mustard	cytosol	49.32	20.06
Bra022791.1-P	Field mustard	cytosol	45.89	19.31
Bra021684.1-P	Field mustard	cytosol	45.89	19.25
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	46.58	19.1
Bra021607.1-P	Field mustard	cytosol	45.21	19.02
Bra021608.1-P	Field mustard	cytosol	43.84	18.93
Bra021683.1-P	Field mustard	mitochondrion	47.26	18.3
Bra005412.1-P	Field mustard	cytosol	43.84	17.83
Bra033585.1-P	Field mustard	cytosol, plastid	43.84	17.63
Bra004072.1-P	Field mustard	cytosol, plastid	43.84	17.53
Bra005142.1-P	Field mustard	cytosol	39.73	16.67
Bra021609.1-P	Field mustard	cytosol	41.1	16.67
Bra021610.1-P	Field mustard	cytosol	39.04	16.01
Bra022790.1-P	Field mustard	plasma membrane	34.93	15.94
Bra001029.1-P	Field mustard	cytosol	31.51	13.07
Bra005411.1-P	Field mustard	cytosol	47.95	12.57

Protein Annotations

EnsemblPlants:Bra000669.1	EnsemblPlants:Bra000669.1-P	EnsemblPlantsGene:Bra000669	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SUPFAM:SSF117281	UniParc:UPI0002540281
UniProt:M4C8Z1	MapMan:35.1	:	:	:	:

Description

AT4G38940 (E=4e-029) | kelch repeat-containing F-box family protein

Coordinates

chrA03:-:12377787..12378227

Molecular Weight (calculated)

16593.8 Da

IEP (calculated)

4.738

GRAVY (calculated)

-0.287

Length

146 amino acids

Sequence
(BLAST)

001: MRGIRESYSI VYDPKENKWE MNEVLNSKDW EGGCVVDDVL YYLDCSDKAL RAYDPKQSRW SVVYGLDEFL AAETTQSKWA NAVKCGEKKL ALFFLKTHDG
101: KKVICCAEIA LERRQGGEIW GKMESFDAVI EDGGLFDVMK CVAVTV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.