Factsheet for Bra022778.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84859	Canola	cytosol	71.83	93.07
Bra022777.1-P	Field mustard	cytosol	61.69	62.04
Bra005410.1-P	Field mustard	cytosol	52.39	51.81
Bra021684.1-P	Field mustard	cytosol	50.14	51.15
Bra000669.1-P	Field mustard	cytosol	20.28	49.32
Bra022791.1-P	Field mustard	cytosol	46.76	47.84
Bra021683.1-P	Field mustard	mitochondrion	49.86	46.95
Bra021609.1-P	Field mustard	cytosol	47.32	46.67
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	46.76	46.63
Bra004072.1-P	Field mustard	cytosol, plastid	47.89	46.58
Bra022790.1-P	Field mustard	plasma membrane	41.97	46.56
Bra021610.1-P	Field mustard	cytosol	46.48	46.35
Bra021607.1-P	Field mustard	cytosol	44.51	45.53
Bra005142.1-P	Field mustard	cytosol	44.51	45.4
Bra033997.1-P	Field mustard	cytosol	29.3	44.83
Bra021608.1-P	Field mustard	cytosol	41.13	43.2
Bra005412.1-P	Field mustard	cytosol	43.38	42.9
Bra022024.1-P	Field mustard	cytosol	19.15	42.77
Bra039467.1-P	Field mustard	cytosol	41.13	41.36
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	41.69	40.88
Bra010511.1-P	Field mustard	cytosol	21.13	40.32
Bra000665.1-P	Field mustard	cytosol	41.41	40.05
Bra000668.1-P	Field mustard	cytosol	37.18	39.76
Bra033585.1-P	Field mustard	cytosol, plastid	40.56	39.67
Bra004774.1-P	Field mustard	cytosol	39.15	39.27
Bra016843.1-P	Field mustard	cytosol	38.31	39.08
Bra020387.1-P	Field mustard	cytosol	40.28	38.75
Bra005411.1-P	Field mustard	cytosol	52.68	33.57
Bra001029.1-P	Field mustard	cytosol	33.24	33.52

Protein Annotations

EnsemblPlants:Bra022778.1	EnsemblPlants:Bra022778.1-P	EnsemblPlantsGene:Bra022778	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI00025401D8	UniProt:M4E1X8	MapMan:35.1	:	:

Description

AT4G38940 (E=4e-070) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:7008833..7009900

Molecular Weight (calculated)

41456.4 Da

IEP (calculated)

7.682

GRAVY (calculated)

-0.250

Length

355 amino acids

Sequence
(BLAST)

001: MSSKKIMAKE EQSSLIMLLP LDVIVDILAR VSRFDYPILS LVCKHFQSIV TSPEIFTRRS LLGRTEHCLY VFLVDEDEPV WRKRLYILCP KANGEHRLVL
101: IRSLPDMPTY ISQTATGSRI YVFSWSNKHH MITLSIDCGS HTVQPLPDVP VLMSPRMADI IKGRIYVIGY DNGWERVMVV FNTETQMWEP RVIRLDKKGN
201: KCTDGCAVMG DKMYMRNLSK TLVYDPKESK WERDEMMNLH KWKNACVVDD VLYFYNPCDF YDREGGLRAY DQKQRRWRVV NGLEPLLPET TSSAWPHVVN
301: YGGKLALFYL KRNEIWCDEI SLETRQDGEI WGKVEWCERL VTGNFDFMKA LDVVV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.