Factsheet for Bra004072.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56521	Canola	cytosol, plastid	100.0	100.0
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	61.92	63.48
Bra022777.1-P	Field mustard	cytosol	49.59	51.27
Bra021684.1-P	Field mustard	cytosol	48.22	50.57
Bra005410.1-P	Field mustard	cytosol	48.77	49.58
Bra022024.1-P	Field mustard	cytosol	21.1	48.43
Bra021610.1-P	Field mustard	cytosol	46.85	48.03
Bra022778.1-P	Field mustard	cytosol	46.58	47.89
Bra022791.1-P	Field mustard	cytosol	44.93	47.26
Bra021607.1-P	Field mustard	cytosol	44.93	47.26
Bra021609.1-P	Field mustard	cytosol	46.03	46.67
Bra022790.1-P	Field mustard	plasma membrane	40.27	45.94
Bra021683.1-P	Field mustard	mitochondrion	47.4	45.89
Bra005412.1-P	Field mustard	cytosol	43.29	44.01
Bra000669.1-P	Field mustard	cytosol	17.53	43.84
Bra005142.1-P	Field mustard	cytosol	41.64	43.68
Bra033997.1-P	Field mustard	cytosol	27.67	43.53
Bra039467.1-P	Field mustard	cytosol	39.73	41.08
Bra033585.1-P	Field mustard	cytosol, plastid	40.82	41.05
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	39.73	40.06
Bra000665.1-P	Field mustard	cytosol	40.27	40.05
Bra004774.1-P	Field mustard	cytosol	38.63	39.83
Bra021608.1-P	Field mustard	cytosol	36.71	39.65
Bra016843.1-P	Field mustard	cytosol	37.26	39.08
Bra000668.1-P	Field mustard	cytosol	35.34	38.86
Bra020387.1-P	Field mustard	cytosol	38.9	38.48
Bra001029.1-P	Field mustard	cytosol	36.99	38.35
Bra010511.1-P	Field mustard	cytosol	18.63	36.56
Bra005411.1-P	Field mustard	cytosol	49.04	32.14

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra004072	EnsemblPlants:Bra004072.1	EnsemblPlants:Bra004072.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4CIN8	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002541378	SEG:seg

Description

AT4G38940 (E=1e-065) | kelch repeat-containing F-box family protein

Coordinates

chrA07:+:16666701..16667798

Molecular Weight (calculated)

41865.0 Da

IEP (calculated)

9.930

GRAVY (calculated)

-0.295

Length

365 amino acids

Sequence
(BLAST)

001: MSSNIRAEKK QSPSSSPITS LPEDVVVDIL ARVPRRDYPR VSLVSKYFRS LVSSPEIYAR RSSLGCTEHC LYVVLYEKDN DDNMYKRLYM LRQKEKDKGF
101: RPKKKRKRKK DKGLVLIPGL PAMPRYESVA AVGSRIYVFD GINSYIIDCT SHTVQHLPRM PVPLSYTVAG VIGGRVYVFG YRGKSKAMLV FNTETQTWED
201: GMTKPVRKVC DGSLVVMADK MYMTDGIKSF VYDPKESKWE TDKMLSSKFW EYACVVDDVL YYHHFSDNEL IAYDPEHKCW QVVKGVKKVL AKMRRVGYFW
301: AKAVSYAGKL VLFFRKKGVT GEICFAKISV ERREGGQIWG KVVQWCDHGL IAGGFYFTKS LDVVL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.