Factsheet for Bra021608.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29701	Canola	cytosol	28.99	72.59
Bra021609.1-P	Field mustard	cytosol	58.58	55.0
Bra021610.1-P	Field mustard	cytosol	56.21	53.37
Bra005410.1-P	Field mustard	cytosol	46.75	44.01
Bra000669.1-P	Field mustard	cytosol	18.93	43.84
Bra022024.1-P	Field mustard	cytosol	19.82	42.14
Bra022778.1-P	Field mustard	cytosol	43.2	41.13
Bra021607.1-P	Field mustard	cytosol	41.42	40.35
Bra022791.1-P	Field mustard	cytosol	41.12	40.06
Bra021684.1-P	Field mustard	cytosol	41.12	39.94
Bra022777.1-P	Field mustard	cytosol	41.42	39.66
Bra033997.1-P	Field mustard	cytosol	26.63	38.79
Bra022790.1-P	Field mustard	plasma membrane	36.39	38.44
Bra021683.1-P	Field mustard	mitochondrion	41.42	37.14
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	38.76	36.8
Bra005412.1-P	Field mustard	cytosol	39.05	36.77
Bra004072.1-P	Field mustard	cytosol, plastid	39.65	36.71
Bra016843.1-P	Field mustard	cytosol	37.57	36.49
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	39.05	36.46
Bra004774.1-P	Field mustard	cytosol	37.87	36.16
Bra039467.1-P	Field mustard	cytosol	37.28	35.69
Bra005142.1-P	Field mustard	cytosol	36.69	35.63
Bra000668.1-P	Field mustard	cytosol	34.62	35.24
Bra020387.1-P	Field mustard	cytosol	38.17	34.96
Bra033585.1-P	Field mustard	cytosol, plastid	35.8	33.33
Bra000665.1-P	Field mustard	cytosol	36.09	33.24
Bra010511.1-P	Field mustard	cytosol	16.57	30.11
Bra001029.1-P	Field mustard	cytosol	30.77	29.55
Bra005411.1-P	Field mustard	cytosol	45.56	27.65

Protein Annotations

EnsemblPlants:Bra021608.1	EnsemblPlants:Bra021608.1-P	EnsemblPlantsGene:Bra021608	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002544423	UniProt:M4DYL2	MapMan:35.1	:

Description

AT4G38940 (E=2e-034) | kelch repeat-containing F-box family protein

Coordinates

chrA04:+:13392891..13393981

Molecular Weight (calculated)

40158.9 Da

IEP (calculated)

7.525

GRAVY (calculated)

-0.496

Length

338 amino acids

Sequence
(BLAST)

001: MTSNTRREDK QPPEPTSLIT SLPKDVIFDI LTRLPRYEYS TLSLVSKHFR SLVRSPELYE RRSLIGVTEP FFYALFYDSQ SRNTRWNILH RKATAISAWP
101: LFTRYPLWIV MEALYRLHTV EQLPSMPVPM SNPIADIIDG RIYVIGDHYE ESKKVMVVFN TESQLWELVT TKLNIEFGHT CLTRYAVMDG KLYMRDNVQS
201: NVYEPKKCKW ERENEERLNF HNWRNASVVD NILYYYDFDN CWNKLRSYDP KQRYWGVVEG LEESLPKTRH SYWTGTASCG GKLALVFPNE GWRTSYLRCA
301: EISLEKREEG EIWGKFEWRD QVLVDENLYM KNFLAVMV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.