Factsheet for Bra004774.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79811	Canola	cytosol	99.72	99.72
Bra039467.1-P	Field mustard	cytosol	68.93	69.12
Bra000668.1-P	Field mustard	cytosol	63.56	67.77
Bra020387.1-P	Field mustard	cytosol	69.77	66.94
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	65.54	64.09
Bra000665.1-P	Field mustard	cytosol	65.54	63.22
Bra016843.1-P	Field mustard	cytosol	61.58	62.64
Bra000669.1-P	Field mustard	cytosol	25.42	61.64
Bra010511.1-P	Field mustard	cytosol	29.38	55.91
Bra022024.1-P	Field mustard	cytosol	20.62	45.91
Bra005410.1-P	Field mustard	cytosol	43.22	42.62
Bra021684.1-P	Field mustard	cytosol	41.24	41.95
Bra022777.1-P	Field mustard	cytosol	41.81	41.93
Bra033997.1-P	Field mustard	cytosol	27.12	41.38
Bra021683.1-P	Field mustard	mitochondrion	44.07	41.38
Bra022791.1-P	Field mustard	cytosol	38.7	39.48
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	39.55	39.33
Bra022778.1-P	Field mustard	cytosol	39.27	39.15
Bra033585.1-P	Field mustard	cytosol, plastid	40.11	39.12
Bra021607.1-P	Field mustard	cytosol	38.14	38.9
Bra004072.1-P	Field mustard	cytosol, plastid	39.83	38.63
Bra021609.1-P	Field mustard	cytosol	39.27	38.61
Bra005412.1-P	Field mustard	cytosol	38.7	38.16
Bra021608.1-P	Field mustard	cytosol	36.16	37.87
Bra021610.1-P	Field mustard	cytosol	37.85	37.64
Bra022790.1-P	Field mustard	plasma membrane	33.33	36.88
Bra005142.1-P	Field mustard	cytosol	36.16	36.78
Bra001029.1-P	Field mustard	cytosol	31.36	31.53
Bra005411.1-P	Field mustard	cytosol	43.79	27.83

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra004774	EnsemblPlants:Bra004774.1	EnsemblPlants:Bra004774.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	UniProt:M4CKN9	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002547B6F

Description

AT4G38940 (E=5e-066) | kelch repeat-containing F-box family protein

Coordinates

chrA05:+:1785727..1786791

Molecular Weight (calculated)

40693.9 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.242

Length

354 amino acids

Sequence
(BLAST)

001: MSPLIPPLPD DVTVDIIARV PISHYPTLNR VSKSFRKLIA SSTLYKRRSQ LGITQPRIYA VLRSRNPQTR DYFNFYILHR KLNSRNRLVL VESLPLMSYL
101: GKYVPVGSKV YVFNDLDALS IDCTSHKSHL ISDIPQRMSY KVANAVDRKV YLIGGLFFSD ESGSLKSAVT VFDTETQSWE PKLVKEDMPV GLGPFLYDSV
201: VMEGKIYMKD YCKGNSFVYE PEERKWGLMD EVLNSKEEWE RACVVDDILY NHDVSENVLR AYDPKQSCWS VVNGLEKFLA VETARSRWSR TVNYGAEKLA
301: LFFHKNQDGK DVIFCAEIAL ERRQGGGIWG EMESCDVVIE DRLFYRIKFV TVTV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.