CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004774.1-P	Field mustard	cytosol	99.72	99.72
CDY05043	Canola	cytosol	73.16	71.75
CDY41928	Canola	cytosol	25.14	71.2
CDY05039	Canola	cytosol, nucleus, plastid	72.32	70.91
CDY41927	Canola	cytosol	70.62	69.83
CDY69309	Canola	cytosol	72.32	69.38
CDX90709	Canola	cytosol	65.54	68.84
CDY05037	Canola	nucleus	13.84	68.06
CDY27802	Canola	cytosol	68.08	67.51
CDY05040	Canola	cytosol	68.64	66.21
CDY41929	Canola	cytosol	35.03	65.61
CDX90705	Canola	cytosol, nucleus, plastid	66.95	65.47
CDX90706	Canola	cytosol	66.95	64.58
CDY50229	Canola	cytosol	67.23	64.5
CDY05044	Canola	nucleus	65.54	63.22
CDX90710	Canola	cytosol	25.99	63.01
CDY05038	Canola	cytosol	39.83	62.67
CDY20989	Canola	cytosol	61.3	62.36
CDY05045	Canola	cytosol	22.03	59.09
CDY67336	Canola	cytosol	32.2	57.58
CDY51551	Canola	cytosol	43.79	56.57
CDY28855	Canola	cytosol	11.86	48.28
CDY24008	Canola	cytosol	16.1	43.85
CDX97774	Canola	cytosol	41.81	42.53
CDX97775	Canola	mitochondrion	45.2	42.44
CDY72582	Canola	mitochondrion	44.92	42.18
CDY17264	Canola	cytosol	36.44	42.02
CDY66893	Canola	mitochondrion	44.35	41.98
CDX84860	Canola	cytosol	41.81	41.93
CDX76734	Canola	cytosol	41.24	41.83
CDY64885	Canola	cytosol	17.23	41.5
CDY47117	Canola	cytosol	41.24	40.78
CDY43958	Canola	cytosol	6.5	40.35
CDX84302	Canola	cytosol	40.4	39.94
CDY54214	Canola	cytosol	40.11	39.89
CDX84859	Canola	cytosol	30.79	39.78
CDX84843	Canola	cytosol	29.38	39.54
CDY29702	Canola	cytosol	38.42	39.19
CDY22405	Canola	cytosol, plastid	40.11	39.12
CDY56521	Canola	cytosol, plastid	40.11	38.9
CDY29700	Canola	cytosol	38.98	38.44
CDY02036	Canola	cytosol	31.64	38.23
CDY17263	Canola	cytosol	38.7	38.16
CDX74917	Canola	cytosol	36.72	37.36
CDX72730	Canola	cytosol	41.24	37.15
CDX84844	Canola	plasma membrane	36.72	37.14
CDX91425	Canola	cytosol	36.44	37.07
CDY29701	Canola	cytosol	14.12	37.04
CDY17265	Canola	cytosol	43.79	36.99
CDY24010	Canola	plasma membrane	33.62	36.17
CDY24030	Canola	cytosol	41.81	35.84
CDY12648	Canola	cytosol	12.71	35.71
CDY28882	Canola	cytosol, plastid	16.95	34.68
CDY02032	Canola	cytosol	27.4	33.8
CDX74275	Canola	cytosol	31.36	31.53
CDX91971	Canola	cytosol	31.36	27.21
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.03	26.99
CDY02035	Canola	cytosol, plastid	13.84	24.75
CDX91970	Canola	cytosol	5.93	14.69
CDX74276	Canola	cytosol	5.93	14.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDX79811	ProteinID:CDX79811	ProteinID:CDX79811.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00132643001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EDE6E3

Description

BnaA05g03450D

Coordinates

chrLK031819:-:243826..245409

Molecular Weight (calculated)

40734.0 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.246

Length

354 amino acids

Sequence
(BLAST)

001: MSPLIPPLPD DVTVDIIARV PISHYPTLNR VSKSFRKLIA SSTLYKRRSQ LGITQHRIYA VLRSRNPQTR DYFNFYILHR KLNSRNRLVL VESLPLMSYL
101: GKYVPVGSKV YVFNDLDALS IDCTSHKSHL ISDIPQRMSY KVANAVDRKV YLIGGLFFSD ESGSLKSAVT VFDTETQSWE PKLVKEDMPV GLGPFLYDSV
201: VMEGKIYMKD YCKGNSFVYE PEERKWGLMD EVLNSKEEWE RACVVDDILY NHDVSENVLR AYDPKQSCWS VVNGLEKFLA VETARSRWSR TVNYGAEKLA
301: LFFHKNQDGK DVIFCAEIAL ERRQGGGIWG EMESCDVVIE DRLFYRIKFV TVTV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.