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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDX96963
CDY13521
CDY14922
CDY16470
CDY39073
CDY40610
CDY40611

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G38940.1 CDX96963 AT1G10230.1 12169662
AT4G38940.1 CDY14922 AT1G10230.1 12169662
AT4G38940.1 CDX68112 AT1G75950.1 12169662
AT4G38940.1 CDX73212 AT1G75950.1 12169662
AT4G38940.1 CDX80590 AT1G75950.1 12169662
AT4G38940.1 CDX85931 AT1G75950.1 12169662
AT4G38940.1 CDX87650 AT1G75950.1 12169662
AT4G38940.1 CDY13521 AT1G75950.1 12169662
AT4G38940.1 CDY39073 AT1G75950.1 12169662
AT4G38940.1 CDX77280 AT3G60010.1 12169662
AT4G38940.1 CDX93698 AT3G60010.1 12169662
AT4G38940.1 CDX93699 AT3G60010.1 12169662
AT4G38940.1 CDY16470 AT3G60010.1 12169662
AT4G38940.1 CDY40610 AT3G60010.1 12169662
AT4G38940.1 CDY40611 AT3G60010.1 12169662
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22405 Canola cytosol, plastid 84.99 92.01
AT4G38940.1 Thale cress cytosol 65.39 69.46
CDY05037 Canola nucleus 9.16 50.0
CDY41928 Canola cytosol 15.78 49.6
CDX90710 Canola cytosol 17.05 45.89
CDX76734 Canola cytosol 40.46 45.56
CDX74275 Canola cytosol 40.2 44.89
CDY47117 Canola cytosol 40.71 44.69
CDY02036 Canola cytosol 33.08 44.37
CDX84860 Canola cytosol 39.69 44.19
CDX97774 Canola cytosol 38.93 43.97
CDY29702 Canola cytosol 38.68 43.8
CDY54214 Canola cytosol 39.44 43.54
CDY28882 Canola cytosol, plastid 19.08 43.35
CDY17264 Canola cytosol 33.84 43.32
CDY05038 Canola cytosol 24.68 43.11
CDY24008 Canola cytosol 14.25 43.08
CDY41927 Canola cytosol 39.19 43.02
CDY72582 Canola mitochondrion 41.22 42.97
CDY05040 Canola cytosol 39.95 42.78
CDY56521 Canola cytosol, plastid 39.69 42.74
CDX97775 Canola mitochondrion 40.97 42.71
CDX84859 Canola cytosol 29.77 42.7
CDY05039 Canola cytosol, nucleus, plastid 39.19 42.66
CDY05043 Canola cytosol 39.19 42.66
CDX74917 Canola cytosol 37.66 42.53
CDX91425 Canola cytosol 37.66 42.53
CDY28855 Canola cytosol 9.41 42.53
CDX90709 Canola cytosol 36.39 42.43
CDY51551 Canola cytosol 29.52 42.34
CDX84843 Canola cytosol 28.24 42.21
CDX84844 Canola plasma membrane 37.4 42.0
CDX90705 Canola cytosol, nucleus, plastid 38.68 41.99
CDY05044 Canola nucleus 39.19 41.96
CDY27802 Canola cytosol 37.91 41.74
CDY66893 Canola mitochondrion 39.69 41.71
CDX90706 Canola cytosol 38.93 41.69
CDX79811 Canola cytosol 37.15 41.24
CDY29700 Canola cytosol 37.66 41.23
CDY69309 Canola cytosol 38.68 41.19
CDX84302 Canola cytosol 37.15 40.78
CDY12648 Canola cytosol 12.98 40.48
CDY17263 Canola cytosol 36.9 40.39
CDY50229 Canola cytosol 37.91 40.38
CDY41929 Canola cytosol 19.08 39.68
CDY64885 Canola cytosol 14.76 39.46
CDY24010 Canola plasma membrane 32.82 39.21
CDY67336 Canola cytosol 19.59 38.89
CDY20989 Canola cytosol 34.35 38.79
CDY05045 Canola cytosol 12.98 38.64
CDY17265 Canola cytosol 40.97 38.42
CDX91971 Canola cytosol 39.69 38.24
CDY29701 Canola cytosol 12.98 37.78
CDY24030 Canola cytosol 38.68 36.8
CDY02032 Canola cytosol 26.46 36.24
CDY64633 Canola cytosol, nucleus, plasma membrane 21.63 29.41
CDY02035 Canola cytosol, plastid 13.49 26.77
CDY43958 Canola cytosol 3.56 24.56
CDX91970 Canola cytosol 4.83 13.29
CDX74276 Canola cytosol 4.83 13.29
Protein Annotations
Gene3D:2.120.10.80MapMan:35.1EnsemblPlants:CDX72730ProteinID:CDX72730ProteinID:CDX72730.1InterPro:F-box-like_dom_sf
InterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00100328001InterPro:IPR001810
InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_1InterPro:Kelch_2PFAM:PF00646PFAM:PF07646
PFAM:PF13964PFscan:PS50181PANTHER:PTHR24414PANTHER:PTHR24414:SF23SMART:SM00256SMART:SM00612
SUPFAM:SSF117281SUPFAM:SSF81383UniParc:UPI0004EE1E93SEG:seg::
Description
BnaC07g47520D
Coordinates
chrLK031796:-:2853497..2854903
Molecular Weight (calculated)
43784.7 Da
IEP (calculated)
8.236
GRAVY (calculated)
-0.086
Length
393 amino acids
Sequence
(BLAST)
001: MISILKKLGF YWSFGRLYDT SSINRDMSSS EIRAQKKQPP SPISSLPEEI FVDIVARVSR SYYPTLSQVS RRFRSLVASP ELYARRSVLG RTEQCIYVAI
101: SKDQTSDIHW FTLCIKPNGE GASGGGASDH RLVHIPSLPP MPLQGSYVAV GSNIFVMGGF QDWSITSSVS LIDCRSHTAQ PLADMPKAVA GSVAQVIDGK
201: IYVIGGANGH SPMKSRSRTM MVFDTETEVW KLKSRPDWEQ GKVWFSSVAM GGKIYMRTCY NSFVYDPVTS TDYFVGDEVL HSKEWLGSCV IDDVLYYYDV
301: RGKCLRAYDP KLRSWGVVKG LEGLLPRGCS WSKAASYGGG KMVLFMQTEE IWCAEIAVER RQGGEIWGTV EWCEVVLGGN FRIMDCVPVA VLL
Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)
001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL
Arabidopsis Description
F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.