CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021607.1-P	Field mustard	cytosol	99.42	99.42
CDY02036	Canola	cytosol	49.28	58.36
CDY28855	Canola	cytosol	12.97	51.72
CDY12648	Canola	cytosol	17.29	47.62
CDX97774	Canola	cytosol	47.55	47.41
CDY29700	Canola	cytosol	48.99	47.35
CDY05037	Canola	nucleus	9.8	47.22
CDX84860	Canola	cytosol	47.84	47.03
CDX84859	Canola	cytosol	36.6	46.35
CDY28882	Canola	cytosol, plastid	23.05	46.24
CDX76734	Canola	cytosol	46.4	46.13
CDY47117	Canola	cytosol	46.97	45.53
CDY56521	Canola	cytosol, plastid	47.84	45.48
CDY24008	Canola	cytosol	16.71	44.62
CDX97775	Canola	mitochondrion	48.41	44.56
CDY54214	Canola	cytosol	45.53	44.38
CDY72582	Canola	mitochondrion	48.13	44.3
CDY64885	Canola	cytosol	18.73	44.22
CDY43958	Canola	cytosol	7.2	43.86
CDX90710	Canola	cytosol	18.44	43.84
CDY17264	Canola	cytosol	38.62	43.65
CDY66893	Canola	mitochondrion	46.69	43.32
CDX84844	Canola	plasma membrane	43.52	43.14
CDY29701	Canola	cytosol	16.43	42.22
CDX84843	Canola	cytosol	31.99	42.21
CDY17263	Canola	cytosol	43.23	41.78
CDX84302	Canola	cytosol	42.94	41.62
CDY41928	Canola	cytosol	14.99	41.6
CDX90705	Canola	cytosol, nucleus, plastid	42.94	41.16
CDY05044	Canola	nucleus	42.94	40.6
CDX74917	Canola	cytosol	40.63	40.52
CDY51551	Canola	cytosol	31.99	40.51
CDY22405	Canola	cytosol, plastid	42.36	40.5
CDY02032	Canola	cytosol	33.43	40.42
CDY24010	Canola	plasma membrane	38.04	40.12
CDY17265	Canola	cytosol	48.41	40.1
CDY24030	Canola	cytosol	47.55	39.95
CDY05039	Canola	cytosol, nucleus, plastid	41.21	39.61
CDX91425	Canola	cytosol	39.48	39.37
CDY05038	Canola	cytosol	25.36	39.11
CDX72730	Canola	cytosol	43.8	38.68
CDX90709	Canola	cytosol	37.46	38.58
CDY69309	Canola	cytosol	40.92	38.48
CDX79811	Canola	cytosol	39.19	38.42
CDY41927	Canola	cytosol	39.48	38.27
CDY05040	Canola	cytosol	40.35	38.15
CDY05043	Canola	cytosol	39.48	37.95
CDY50229	Canola	cytosol	40.35	37.94
CDY20989	Canola	cytosol	38.04	37.93
CDX90706	Canola	cytosol	39.48	37.33
CDY27802	Canola	cytosol	38.33	37.25
CDX74275	Canola	cytosol	37.46	36.93
CDY05045	Canola	cytosol	13.83	36.36
CDY41929	Canola	cytosol	19.6	35.98
CDY67336	Canola	cytosol	20.46	35.86
CDY02035	Canola	cytosol, plastid	19.31	33.84
CDX91971	Canola	cytosol	37.75	32.11
CDY64633	Canola	cytosol, nucleus, plasma membrane	25.36	30.45
CDX91970	Canola	cytosol	6.05	14.69
CDX74276	Canola	cytosol	6.05	14.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078GWY2	EnsemblPlants:CDY29702	ProteinID:CDY29702	ProteinID:CDY29702.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00043481001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0004EF2757	SEG:seg	:	:	:	:

Description

BnaA04g17250DBnaA04g17250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWY2]

Coordinates

chrLK032241:-:427063..428106

Molecular Weight (calculated)

40394.6 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.170

Length

347 amino acids

Sequence
(BLAST)

001: MTNEPPSLIT SLPDDIVLDI LARVPRWDYP TLSLVSKHFQ SLVVSPEIYS RRSLLRCTEN FLYVLVLSNR GYCLYILHRK AFVHISSLSD IPYCESFVAV
101: GSRIYMFGGV VGVSSNAFSI DCRSHTVKPL PHMPICLAHT VAGFMDEKIY VFGQCSMKSM VMVVFNTKTH MWEPGLIKPD ISPETWEFGS MVVMADKIYI
201: RSNPSSFIYA PKESKWETDE MLNSKNWDND SCVVDDVLYY YDSYEDRLRA YDPKQKCWGV VKGLDEELFD EIRRGPYWPY TACFGRNLLL YFYKRYQEPR
301: SRTPSKIWWA EISLERRQGG EIWGKVEWCD RVLYEQSEFA MPVSVMV

Best Arabidopsis Sequence Match ( AT3G10510.1 )
(BLAST)

001: MLSEDEKEKT PPSVMTSIPD DVIMECIAPR VPRYNHSMLS LVSKQFRSLV ASPRLYKTRS LLGCTEDCVY VLIEDCILEV ARWYSLNRRT KRNMPGTVEN
101: RLVLISSLPP MPTAASYVVV GSNIFVMGGR YDWNVEEWEA QPPSSIALCI DCRTHTTRLV ADMPVGLMTN VSKVIDEKIY IVGRVWASAT IVEFDLRTEK
201: WADGTKPGWE ADDRWLTSLS TTAGRGPSSF ENNCDHKLME DILMDKEEIK HYHLFDNECV MGNILYVYDR HKYILRTYDP KQRTWGVVKG LEKLPLGGDE
301: SYIVSRGKML ILFLIVVLEY DDDASFQKRE LWCAEITVER REEGEIWGKV ECCDLLLEGG LIIGSCLVVT L

Arabidopsis Description

Putative F-box/kelch-repeat protein At3g10510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.