Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032070.1-P | Field mustard | cytosol, peroxisome, plastid | 97.75 | 97.75 |
| CDY28855 | Canola | cytosol | 16.85 | 68.97 |
| CDX76734 | Canola | cytosol | 67.42 | 68.77 |
| CDY28882 | Canola | cytosol, plastid | 30.62 | 63.01 |
| CDY56521 | Canola | cytosol, plastid | 64.04 | 62.47 |
| CDX97774 | Canola | cytosol | 50.0 | 51.15 |
| CDY24008 | Canola | cytosol | 17.98 | 49.23 |
| CDX84860 | Canola | cytosol | 48.03 | 48.44 |
| CDY66893 | Canola | mitochondrion | 50.56 | 48.13 |
| CDX97775 | Canola | mitochondrion | 50.84 | 48.01 |
| CDY72582 | Canola | mitochondrion | 50.56 | 47.75 |
| CDX84843 | Canola | cytosol | 35.11 | 47.53 |
| CDY05037 | Canola | nucleus | 9.55 | 47.22 |
| CDX84859 | Canola | cytosol | 36.24 | 47.08 |
| CDX84844 | Canola | plasma membrane | 45.22 | 46.0 |
| CDY29702 | Canola | cytosol | 44.38 | 45.53 |
| CDY29700 | Canola | cytosol | 45.79 | 45.4 |
| CDY17264 | Canola | cytosol | 39.04 | 45.28 |
| CDY41928 | Canola | cytosol | 15.73 | 44.8 |
| CDY17263 | Canola | cytosol | 44.94 | 44.57 |
| CDY02036 | Canola | cytosol | 36.52 | 44.37 |
| CDY64885 | Canola | cytosol | 18.26 | 44.22 |
| CDY51551 | Canola | cytosol | 33.99 | 44.16 |
| CDX84302 | Canola | cytosol | 44.38 | 44.13 |
| CDY12648 | Canola | cytosol | 15.45 | 43.65 |
| CDY47117 | Canola | cytosol | 43.82 | 43.58 |
| CDX90710 | Canola | cytosol | 17.7 | 43.15 |
| CDY24010 | Canola | plasma membrane | 39.61 | 42.86 |
| CDX74917 | Canola | cytosol | 41.57 | 42.53 |
| CDY22405 | Canola | cytosol, plastid | 43.26 | 42.42 |
| CDX91425 | Canola | cytosol | 41.29 | 42.24 |
| CDY43958 | Canola | cytosol | 6.74 | 42.11 |
| CDY02032 | Canola | cytosol | 33.43 | 41.46 |
| CDX90705 | Canola | cytosol, nucleus, plastid | 41.57 | 40.88 |
| CDY17265 | Canola | cytosol | 48.03 | 40.81 |
| CDY41927 | Canola | cytosol | 40.73 | 40.5 |
| CDX79811 | Canola | cytosol | 39.89 | 40.11 |
| CDY05040 | Canola | cytosol | 41.01 | 39.78 |
| CDY05043 | Canola | cytosol | 40.17 | 39.61 |
| CDY69309 | Canola | cytosol | 41.01 | 39.57 |
| CDY05044 | Canola | nucleus | 40.73 | 39.51 |
| CDY24030 | Canola | cytosol | 45.79 | 39.47 |
| CDX72730 | Canola | cytosol | 43.54 | 39.44 |
| CDY05039 | Canola | cytosol, nucleus, plastid | 39.89 | 39.34 |
| CDY50229 | Canola | cytosol | 40.45 | 39.02 |
| CDX90709 | Canola | cytosol | 36.8 | 38.87 |
| CDX90706 | Canola | cytosol | 39.89 | 38.69 |
| CDY05038 | Canola | cytosol | 24.44 | 38.67 |
| CDY05045 | Canola | cytosol | 14.33 | 38.64 |
| CDY29701 | Canola | cytosol | 14.61 | 38.52 |
| CDY27802 | Canola | cytosol | 38.2 | 38.1 |
| CDY20989 | Canola | cytosol | 36.52 | 37.36 |
| CDY67336 | Canola | cytosol | 19.94 | 35.86 |
| CDY41929 | Canola | cytosol | 18.82 | 35.45 |
| CDX74275 | Canola | cytosol | 34.83 | 35.23 |
| CDY64633 | Canola | cytosol, nucleus, plasma membrane | 26.4 | 32.53 |
| CDX91971 | Canola | cytosol | 35.39 | 30.88 |
| CDY02035 | Canola | cytosol, plastid | 15.17 | 27.27 |
| CDX91970 | Canola | cytosol | 6.18 | 15.38 |
| CDX74276 | Canola | cytosol | 6.18 | 15.38 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078IXZ3 | EnsemblPlants:CDY54214 | ProteinID:CDY54214 |
| ProteinID:CDY54214.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00013609001 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PFAM:PF00646 | PFscan:PS50181 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF23 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EDFE91 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g28180DBnaA04g28180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXZ3]
Coordinates
chrLK033292:-:21971..23041
Molecular Weight (calculated)
40210.2 Da
IEP (calculated)
6.640
GRAVY (calculated)
-0.133
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWPEKKQSP PPSPITSLPE DVAVDILARL PICDYPRVSL VSKRFRSLVS SPEIYARRRS SPGCTEHCLY VFLYNYANRV NRLYTLRRSN SSSRLVLIPG
101: LPPTIPPYGS FAAVGSRIYV FDGVNSSYTI DCTSHTVQHL PRMPVPLSNT VADVVGGRIY VVGYHDADPK SKAMLEFNTE TQTWKGPMTV PGMQIRDGCV
201: VAMAGKMYIR DFEKSFVYDP EESKWETDEV LSSKCWGESA CVVDDVLFFY DWSDNELRAY DPERKCWQVV KGLDDLLAEI RGVACCWLQT VSYGGRLVLL
301: YGKGEFLYIT KEVCCAEVSL EIRQGGQIWG KVYQWCDDHA LIAGNFIIRK SLDVVL
101: LPPTIPPYGS FAAVGSRIYV FDGVNSSYTI DCTSHTVQHL PRMPVPLSNT VADVVGGRIY VVGYHDADPK SKAMLEFNTE TQTWKGPMTV PGMQIRDGCV
201: VAMAGKMYIR DFEKSFVYDP EESKWETDEV LSSKCWGESA CVVDDVLFFY DWSDNELRAY DPERKCWQVV KGLDDLLAEI RGVACCWLQT VSYGGRLVLL
301: YGKGEFLYIT KEVCCAEVSL EIRQGGQIWG KVYQWCDDHA LIAGNFIIRK SLDVVL
001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV
Arabidopsis Description
SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.