CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDX96963
CDY13521
CDY14922
CDY16470
CDY39073
CDY40610
CDY40611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38940.1	CDX96963	AT1G10230.1	12169662
AT4G38940.1	CDY14922	AT1G10230.1	12169662
AT4G38940.1	CDX68112	AT1G75950.1	12169662
AT4G38940.1	CDX73212	AT1G75950.1	12169662
AT4G38940.1	CDX80590	AT1G75950.1	12169662
AT4G38940.1	CDX85931	AT1G75950.1	12169662
AT4G38940.1	CDX87650	AT1G75950.1	12169662
AT4G38940.1	CDY13521	AT1G75950.1	12169662
AT4G38940.1	CDY39073	AT1G75950.1	12169662
AT4G38940.1	CDX77280	AT3G60010.1	12169662
AT4G38940.1	CDX93698	AT3G60010.1	12169662
AT4G38940.1	CDX93699	AT3G60010.1	12169662
AT4G38940.1	CDY16470	AT3G60010.1	12169662
AT4G38940.1	CDY40610	AT3G60010.1	12169662
AT4G38940.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033585.1-P	Field mustard	cytosol, plastid	97.52	97.52
CDX72730	Canola	cytosol	92.01	84.99
AT4G38940.1	Thale cress	cytosol	66.12	64.86
CDY41928	Canola	cytosol	17.08	49.6
CDY05037	Canola	nucleus	9.64	48.61
CDX90710	Canola	cytosol	17.91	44.52
CDY47117	Canola	cytosol	43.8	44.41
CDX76734	Canola	cytosol	42.7	44.41
CDY02036	Canola	cytosol	35.26	43.69
CDX74275	Canola	cytosol	42.15	43.47
CDY54214	Canola	cytosol	42.42	43.26
CDY24008	Canola	cytosol	15.43	43.08
CDY28882	Canola	cytosol, plastid	20.39	42.77
CDX84860	Canola	cytosol	41.32	42.49
CDY29702	Canola	cytosol	40.5	42.36
CDX97774	Canola	cytosol	40.5	42.24
CDY41927	Canola	cytosol	41.32	41.9
CDX84843	Canola	cytosol	30.3	41.83
CDY05038	Canola	cytosol	25.9	41.78
CDY17264	Canola	cytosol	35.26	41.69
CDY05039	Canola	cytosol, nucleus, plastid	41.32	41.55
CDY05040	Canola	cytosol	41.87	41.42
CDY05043	Canola	cytosol	41.05	41.27
CDX90709	Canola	cytosol	38.02	40.95
CDX90705	Canola	cytosol, nucleus, plastid	40.77	40.88
CDX84859	Canola	cytosol	30.85	40.88
CDY51551	Canola	cytosol	30.85	40.88
CDY05044	Canola	nucleus	41.32	40.87
CDY27802	Canola	cytosol	39.94	40.62
CDX91425	Canola	cytosol	38.84	40.52
CDX90706	Canola	cytosol	40.77	40.33
CDY72582	Canola	mitochondrion	41.87	40.32
CDY56521	Canola	cytosol, plastid	40.5	40.27
CDX74917	Canola	cytosol	38.57	40.23
CDX79811	Canola	cytosol	39.12	40.11
CDY69309	Canola	cytosol	40.77	40.11
CDX97775	Canola	mitochondrion	41.6	40.05
CDY50229	Canola	cytosol	40.5	39.84
CDX84844	Canola	plasma membrane	38.29	39.71
CDY12648	Canola	cytosol	13.77	39.68
CDX84302	Canola	cytosol	39.12	39.66
CDY66893	Canola	mitochondrion	40.5	39.3
CDY29700	Canola	cytosol	38.84	39.28
CDY28855	Canola	cytosol	9.37	39.08
CDY17263	Canola	cytosol	38.29	38.72
CDY41929	Canola	cytosol	20.11	38.62
CDY24010	Canola	plasma membrane	34.44	37.99
CDY05045	Canola	cytosol	13.77	37.88
CDY29701	Canola	cytosol	14.05	37.78
CDY20989	Canola	cytosol	36.09	37.64
CDY67336	Canola	cytosol	20.39	37.37
CDX91971	Canola	cytosol	41.6	37.01
CDY17265	Canola	cytosol	42.7	36.99
CDY64885	Canola	cytosol	14.88	36.73
CDY02032	Canola	cytosol	28.93	36.59
CDY24030	Canola	cytosol	40.22	35.35
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.31	28.03
CDY02035	Canola	cytosol, plastid	14.6	26.77
CDY43958	Canola	cytosol	3.58	22.81
CDX91970	Canola	cytosol	5.51	13.99
CDX74276	Canola	cytosol	5.51	13.99

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078G7D3	EnsemblPlants:CDY22405	ProteinID:CDY22405
ProteinID:CDY22405.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00018896001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2
PFAM:PF00646	PFAM:PF07646	PFAM:PF13964	PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF23
SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EDE1C8	SEG:seg

Description

BnaA06g37270DBnaA06g37270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7D3]

Coordinates

chrLK032130:-:581010..582229

Molecular Weight (calculated)

40403.7 Da

IEP (calculated)

7.861

GRAVY (calculated)

-0.087

Length

363 amino acids

Sequence
(BLAST)

001: MSSSETRAQK KQPPSPISSL PEEIFVDIVA RVSRSYYPTL SQVSRRFRSL VASPELYARR SVLQRTEQCI YVAISKDQTS DIHWFTLCIK PNGGGGTSDH
101: RLVHIPSLPP MPLQGSYVAV GSSIFVMGGF QDWSITSSVS LIDCRSHTAQ PLADMPKAVA GSVAQVIDGK IYVIGGANGH SPMKSRSRTM MEFDIETEVW
201: KLKSRLDWEQ GKVWFSSVAM GGKIYMRTCY NSFVCDPVTS PDHFVKDEVL HSKEWLGSCV VEDVLFYYDV RGKCLRAYDP KLRSWGVVNG LEGLLPRGCS
301: WSKAASYGGG KMVLFMQTEE IWCAEIAVER RQGGDIWGTV EWCEVVLGGN FRIMDCVPVA VLL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.