CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05043	Canola	cytosol	94.74	94.74
CDX90709	Canola	cytosol	84.21	90.21
CDY41928	Canola	cytosol	26.59	76.8
CDY41929	Canola	cytosol	37.95	72.49
CDX79811	Canola	cytosol	70.91	72.32
CDY41927	Canola	cytosol	71.47	72.07
CDY69309	Canola	cytosol	73.13	71.54
CDY27802	Canola	cytosol	70.36	71.15
CDX90705	Canola	cytosol, nucleus, plastid	68.14	67.96
CDY05040	Canola	cytosol	68.98	67.85
CDY50229	Canola	cytosol	68.98	67.48
CDX90710	Canola	cytosol	27.15	67.12
CDY05044	Canola	nucleus	68.14	67.03
CDY05037	Canola	nucleus	13.3	66.67
CDX90706	Canola	cytosol	67.04	65.94
CDY05038	Canola	cytosol	41.0	65.78
CDY20989	Canola	cytosol	62.05	64.37
CDY51551	Canola	cytosol	46.26	60.95
CDY05045	Canola	cytosol	22.16	60.61
CDY67336	Canola	cytosol	32.96	60.1
CDY24008	Canola	cytosol	17.17	47.69
CDX84859	Canola	cytosol	34.07	44.89
CDY28855	Canola	cytosol	10.8	44.83
CDX97774	Canola	cytosol	42.94	44.54
CDY66893	Canola	mitochondrion	45.98	44.38
CDX97775	Canola	mitochondrion	46.26	44.3
CDX84860	Canola	cytosol	43.21	44.19
CDX84843	Canola	cytosol	32.13	44.11
CDY72582	Canola	mitochondrion	45.98	44.03
CDY17264	Canola	cytosol	36.84	43.32
CDY47117	Canola	cytosol	42.66	43.02
CDX76734	Canola	cytosol	41.55	42.98
CDX84302	Canola	cytosol	42.38	42.74
CDX84844	Canola	plasma membrane	40.44	41.71
CDY22405	Canola	cytosol, plastid	41.55	41.32
CDY29702	Canola	cytosol	39.61	41.21
CDY17263	Canola	cytosol	40.72	40.95
CDY29700	Canola	cytosol	40.72	40.95
CDY12648	Canola	cytosol	14.13	40.48
CDY64885	Canola	cytosol	16.34	40.14
CDY24010	Canola	plasma membrane	36.57	40.12
CDY29701	Canola	cytosol	14.96	40.0
CDY02036	Canola	cytosol	32.41	39.93
CDY54214	Canola	cytosol	39.34	39.89
CDY56521	Canola	cytosol, plastid	40.17	39.73
CDX74917	Canola	cytosol	38.23	39.66
CDX91425	Canola	cytosol	37.95	39.37
CDX72730	Canola	cytosol	42.66	39.19
CDY28882	Canola	cytosol, plastid	18.28	38.15
CDY17265	Canola	cytosol	43.49	37.47
CDY24030	Canola	cytosol	42.38	37.05
CDY43958	Canola	cytosol	5.82	36.84
CDY02032	Canola	cytosol	27.98	35.19
CDX74275	Canola	cytosol	33.8	34.66
CDX91971	Canola	cytosol	34.07	30.15
CDY64633	Canola	cytosol, nucleus, plasma membrane	22.71	28.37
CDY02035	Canola	cytosol, plastid	13.3	24.24
CDX91970	Canola	cytosol	7.48	18.88
CDX74276	Canola	cytosol	7.48	18.88

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlants:CDY05039	ProteinID:CDY05039	ProteinID:CDY05039.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00119789001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF0513

Description

BnaC03g28370D

Coordinates

chrLK031959:+:187349..188629

Molecular Weight (calculated)

41033.1 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.234

Length

361 amino acids

Sequence
(BLAST)

001: MSENMEQSLT PSLPDDVIID IVARVPRSHY PTLSLVSKSF RKLIASPTLY KRRSFLGITQ HRLYAVLRNP QTRDNFSFYI LHKKLKCSNR LVIVGSRTLH
101: HMSSRGSYVS VGSKVYGFND LDALSIDCTS HTCQPISDIP QLMTNKVANV IDRKIYLIGG SFLPDESGSR EAWKNVVAVF DTETQSWEPK LVKEDIHVGL
201: GPFWSDSMVM EGKIYLKDYS NGNSFVYEPE ERKWELMDEV LNSEEWVGAC VVDDVLYYHD CFEMALKAYD PKQRCWSVVN GLKDFLAVET ADSVRSHAVS
301: YGEKKLALFF HKNHDGKEVI CCAEIALERR QGGEIWGQKE SCDVVIEDGM VDMVKFVSVT V

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.