CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005412.1-P	Field mustard	cytosol	98.05	98.05
CDX84302	Canola	cytosol	84.96	85.2
CDY17264	Canola	cytosol	45.4	53.09
CDY28855	Canola	cytosol	11.98	49.43
CDY24008	Canola	cytosol	17.55	48.46
CDY17265	Canola	cytosol	56.27	48.21
CDX76734	Canola	cytosol	46.52	47.85
CDY43958	Canola	cytosol	7.52	47.37
CDX84860	Canola	cytosol	44.85	45.61
CDX84843	Canola	cytosol	33.15	45.25
CDY54214	Canola	cytosol	44.57	44.94
CDX97774	Canola	cytosol	43.45	44.83
CDX90710	Canola	cytosol	17.83	43.84
CDX84844	Canola	plasma membrane	42.62	43.71
CDX84859	Canola	cytosol	33.15	43.43
CDY29702	Canola	cytosol	41.78	43.23
CDY56521	Canola	cytosol, plastid	43.45	42.74
CDX97775	Canola	mitochondrion	44.57	42.44
CDY72582	Canola	mitochondrion	44.57	42.44
CDY47117	Canola	cytosol	41.78	41.9
CDY05037	Canola	nucleus	8.36	41.67
CDY29700	Canola	cytosol	41.5	41.5
CDY66893	Canola	mitochondrion	43.18	41.44
CDY02036	Canola	cytosol	33.7	41.3
CDY02032	Canola	cytosol	32.87	41.12
CDY28882	Canola	cytosol, plastid	19.78	41.04
CDY64885	Canola	cytosol	16.71	40.82
CDY05039	Canola	cytosol, nucleus, plastid	40.95	40.72
CDX90709	Canola	cytosol	38.16	40.65
CDY05043	Canola	cytosol	39.83	39.61
CDY24010	Canola	plasma membrane	36.21	39.51
CDX90705	Canola	cytosol, nucleus, plastid	39.83	39.5
CDY29701	Canola	cytosol	14.76	39.26
CDY41928	Canola	cytosol	13.65	39.2
CDY41927	Canola	cytosol	39.0	39.11
CDY05044	Canola	nucleus	39.83	38.96
CDX79811	Canola	cytosol	38.16	38.7
CDY05038	Canola	cytosol	24.23	38.67
CDY69309	Canola	cytosol	39.55	38.48
CDY51551	Canola	cytosol	29.25	38.32
CDY22405	Canola	cytosol, plastid	38.72	38.29
CDY12648	Canola	cytosol	13.37	38.1
CDY24030	Canola	cytosol	43.73	38.01
CDY50229	Canola	cytosol	39.0	37.94
CDX90706	Canola	cytosol	38.72	37.87
CDY05040	Canola	cytosol	38.72	37.87
CDX74917	Canola	cytosol	36.49	37.64
CDY05045	Canola	cytosol	13.65	37.12
CDY20989	Canola	cytosol	35.93	37.07
CDY27802	Canola	cytosol	36.77	36.97
CDX72730	Canola	cytosol	40.39	36.9
CDX91425	Canola	cytosol	35.65	36.78
CDY41929	Canola	cytosol	19.22	36.51
CDY67336	Canola	cytosol	18.94	34.34
CDX74275	Canola	cytosol	32.59	33.24
CDY64633	Canola	cytosol, nucleus, plasma membrane	23.12	28.72
CDX91971	Canola	cytosol	32.59	28.68
CDY02035	Canola	cytosol, plastid	12.81	23.23
CDX91970	Canola	cytosol	5.29	13.29
CDX74276	Canola	cytosol	5.29	13.29

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078FY25	EnsemblPlants:CDY17263	ProteinID:CDY17263	ProteinID:CDY17263.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00095343001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR24414
PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EEE361	SEG:seg

Description

BnaA05g09250DBnaA05g09250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY25]

Coordinates

chrLK032071:+:704583..705662

Molecular Weight (calculated)

41430.0 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.230

Length

359 amino acids

Sequence
(BLAST)

001: MSSSKKEQSP EPPSLIQLLP EDIIIDILSR VRWCDYRTLS LVSKHFRSLV ASHELYARRS LLGCTVRRLY VALSNRETTS HNPYILCLEA NDNHRLVLIP
101: WPTHVPHVGS FVTVGWKLYA FDMLNRYHHL PIPSIDCRFQ TVHLVHCMNA TMDVSVAGVI DGKIYVTGYT KIPWDTSAKM VMAVFNTETQ IWETATETMI
201: GRPYGCVVMA GKMYTRDGRN SFVYDPKESK WETDKRLNMF KWQGGCVVDD VLYYFDNRGG KVLRAYNPRK SSWVVVKGLE RLVAEGRFSE SYYTGSCDGK
301: LVLFLSKDRM TKGIRCAQIS LERRHHQGRS EIWGKIDWCD DVFFRSDDLF VTKTLDVIL

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.