Factsheet for Bra021684.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97774	Canola	cytosol	94.83	94.83
Bra021683.1-P	Field mustard	mitochondrion	62.07	57.29
Bra022777.1-P	Field mustard	cytosol	52.01	51.27
Bra005410.1-P	Field mustard	cytosol	52.87	51.25
Bra022778.1-P	Field mustard	cytosol	51.15	50.14
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	51.15	50.0
Bra004072.1-P	Field mustard	cytosol, plastid	50.57	48.22
Bra021607.1-P	Field mustard	cytosol	47.41	47.55
Bra022791.1-P	Field mustard	cytosol	47.41	47.55
Bra021609.1-P	Field mustard	cytosol	48.28	46.67
Bra022790.1-P	Field mustard	plasma membrane	42.82	46.56
Bra021610.1-P	Field mustard	cytosol	47.13	46.07
Bra000669.1-P	Field mustard	cytosol	19.25	45.89
Bra022024.1-P	Field mustard	cytosol	20.4	44.65
Bra033997.1-P	Field mustard	cytosol	29.31	43.97
Bra005412.1-P	Field mustard	cytosol	45.11	43.73
Bra005142.1-P	Field mustard	cytosol	42.53	42.53
Bra039467.1-P	Field mustard	cytosol	42.24	41.64
Bra004774.1-P	Field mustard	cytosol	41.95	41.24
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	42.82	41.16
Bra021608.1-P	Field mustard	cytosol	39.94	41.12
Bra010511.1-P	Field mustard	cytosol	21.84	40.86
Bra033585.1-P	Field mustard	cytosol, plastid	42.53	40.77
Bra000668.1-P	Field mustard	cytosol	38.51	40.36
Bra000665.1-P	Field mustard	cytosol	42.24	40.05
Bra016843.1-P	Field mustard	cytosol	39.37	39.37
Bra020387.1-P	Field mustard	cytosol	41.38	39.02
Bra001029.1-P	Field mustard	cytosol	35.63	35.23
Bra005411.1-P	Field mustard	cytosol	51.72	32.32

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra021684	EnsemblPlants:Bra021684.1	EnsemblPlants:Bra021684.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	UniProt:M4DYT8	PFAM:PF00646	PFAM:PF07646	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00025449A5
SEG:seg	:	:	:	:	:

Description

AT4G38940 (E=1e-044) | kelch repeat-containing F-box family protein

Coordinates

chrA04:+:13844932..13845978

Molecular Weight (calculated)

40201.3 Da

IEP (calculated)

8.032

GRAVY (calculated)

-0.235

Length

348 amino acids

Sequence
(BLAST)

001: MGKKRKSSEP PSLTASLPHD LVVDILARLS RSDYPALSLV SKHFRSIVSS RELYATRSLL GCMEHCLYVF LADVESKCNR CYILRQKTNG SHGLVLVPSL
101: PSLPYGSRFV AVGSRIYVFG TGKDRNTTLS IDCGSYTVQP LPSMHVPLSY TVADVIDGRI YVMGRHDQRD LDKMMVLVFN TETQTWKTDS EMTTSEIYAH
201: GSVVMADKMY AKYSCKGFVY EPKERKWETD EVLNSKEWRF ACVVDDVLYY YEFYRDKLRA YDRKQRCWLV VKGLEAFFQT SLMWSYVHSV SYDGKLALFF
301: PYGEEIWCAE ISLERSQGGE IWGKVEWCDC LLTSERRFRY TKSLEVFV

Best Arabidopsis Sequence Match ( AT1G60570.1 )
(BLAST)

001: MSDDEEPPLK KNKLPVEEPT LIPSLPEELI LSILARVSRL SYRSLSLVCK RFHSLLTSGE IYRFRSLSGY TENCLYVCLR FSHTGRSHRW FMLREKNKSS
101: GYVLAPIPIS HSPSLHASSI VAVGSKIYKI GGVMDGSSVS ILDCWSHRWL EAPSMQMERD RPSANLIDGK IYVTGGCHRG SYNPSKWMEV FDLKTETWEP
201: VLCRSDRLTF ESYHERTNNL LVDGKLYIFW ADKGVVYNPK DDTWDSLEVP EMDMCLTLFY CCVIENVLYD FFYEELDIKW YDTKARTWRS LLNGMRELHK
301: FVRHASVTLA DYGGKMVMFW DKFVASGDGL GFHKTMMWCA MIALERSDSG EIWGKVEWFG PVLPNQIPLE YAFEYVGSVK V

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g60570 [Source:UniProtKB/Swiss-Prot;Acc:O22698]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.