Factsheet for Bra005411.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17264	Canola	cytosol	50.45	91.53
Bra005410.1-P	Field mustard	cytosol	49.19	76.32
Bra005412.1-P	Field mustard	cytosol	36.98	57.38
Bra022778.1-P	Field mustard	cytosol	33.57	52.68
Bra021684.1-P	Field mustard	cytosol	32.32	51.72
Bra022777.1-P	Field mustard	cytosol	31.96	50.42
Bra021610.1-P	Field mustard	cytosol	31.78	49.72
Bra004072.1-P	Field mustard	cytosol, plastid	32.14	49.04
Bra021609.1-P	Field mustard	cytosol	31.06	48.06
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	30.7	48.03
Bra000669.1-P	Field mustard	cytosol	12.57	47.95
Bra021607.1-P	Field mustard	cytosol	29.8	47.84
Bra022791.1-P	Field mustard	cytosol	29.08	46.69
Bra021608.1-P	Field mustard	cytosol	27.65	45.56
Bra021683.1-P	Field mustard	mitochondrion	30.7	45.36
Bra022790.1-P	Field mustard	plasma membrane	25.49	44.38
Bra005142.1-P	Field mustard	cytosol	27.65	44.25
Bra022024.1-P	Field mustard	cytosol	12.57	44.03
Bra033997.1-P	Field mustard	cytosol	18.31	43.97
Bra004774.1-P	Field mustard	cytosol	27.83	43.79
Bra033585.1-P	Field mustard	cytosol, plastid	28.01	42.98
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	27.47	42.27
Bra039467.1-P	Field mustard	cytosol	26.75	42.21
Bra020387.1-P	Field mustard	cytosol	27.83	42.01
Bra000668.1-P	Field mustard	cytosol	24.96	41.87
Bra000665.1-P	Field mustard	cytosol	27.47	41.69
Bra016843.1-P	Field mustard	cytosol	25.67	41.09
Bra010511.1-P	Field mustard	cytosol	13.46	40.32
Bra001029.1-P	Field mustard	cytosol	22.8	36.08

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra005411	EnsemblPlants:Bra005411.1	EnsemblPlants:Bra005411.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4CMH3	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254800E

Description

AT4G38940 (E=1e-074) | kelch repeat-containing F-box family protein

Coordinates

chrA05:-:5356628..5358878

Molecular Weight (calculated)

64158.6 Da

IEP (calculated)

8.945

GRAVY (calculated)

-0.256

Length

557 amino acids

Sequence
(BLAST)

001: MEDSLRMSSK TRSKKEQSSE QPSLIPSLPE EIIVDILARV GRCRYPKLSL VSKHFRSLVT SHELYERRSL LGCTEHSLYV VLCNKENDNH YCYVLYRKAN
101: GNHSLVLIPS LPKMPRKGGF VAVGSRIYVF GGLNSYRRKK IQTNAISIDC ISQTVHLLPS MNVTMSVSVA DIIDGKIYVT GYRCNMAVFN TETQMWEPKT
201: IPETMNGYMW ACDCVVMAGK MYMRDPVNSF VFVYESKEIK WEMEKMLNKF EWKDACVVDD VLYYYDSGWD VLRAYDPKES SWVVVNGLQE LLADARFSAW
301: SYTGSYGGKL AMFYSKITGK TKVIRCAEIS LERRRQGKKI WGKVEWCDDV LVGVAGVIDG KIYVTAYTKI SWDTSAKMVM AVFNTETQIW DTATETMIGR
401: PYGCVVMAGK MYTRDARNSI VYDLKESKWE TDKRLNMFKW EGGCVVDDLL YYFDIRGGKV LRAYDPRKSS WVVVKGLERL VAEGRFSESY YTGSCRGKLV
501: LFFSKDRRIK GIRCAQISLE RRHHQGRSEI WGKIDWCDDV FFRSDDLFVT KTLDVIL

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.