Factsheet for Bra016843.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20989	Canola	cytosol	98.56	98.56
Bra000669.1-P	Field mustard	cytosol	29.89	71.23
Bra000665.1-P	Field mustard	cytosol	67.53	64.03
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	65.8	63.26
Bra020387.1-P	Field mustard	cytosol	65.52	61.79
Bra004774.1-P	Field mustard	cytosol	62.64	61.58
Bra039467.1-P	Field mustard	cytosol	61.78	60.91
Bra000668.1-P	Field mustard	cytosol	56.61	59.34
Bra010511.1-P	Field mustard	cytosol	29.31	54.84
Bra022024.1-P	Field mustard	cytosol	19.25	42.14
Bra022777.1-P	Field mustard	cytosol	40.52	39.94
Bra021684.1-P	Field mustard	cytosol	39.37	39.37
Bra005410.1-P	Field mustard	cytosol	39.94	38.72
Bra022791.1-P	Field mustard	cytosol	38.51	38.62
Bra033997.1-P	Field mustard	cytosol	25.57	38.36
Bra022778.1-P	Field mustard	cytosol	39.08	38.31
Bra021683.1-P	Field mustard	mitochondrion	41.38	38.2
Bra021608.1-P	Field mustard	cytosol	36.49	37.57
Bra021607.1-P	Field mustard	cytosol	37.36	37.46
Bra004072.1-P	Field mustard	cytosol, plastid	39.08	37.26
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	37.36	36.52
Bra033585.1-P	Field mustard	cytosol, plastid	37.93	36.36
Bra021610.1-P	Field mustard	cytosol	37.07	36.24
Bra022790.1-P	Field mustard	plasma membrane	33.05	35.94
Bra005412.1-P	Field mustard	cytosol	37.07	35.93
Bra021609.1-P	Field mustard	cytosol	37.07	35.83
Bra005142.1-P	Field mustard	cytosol	33.05	33.05
Bra001029.1-P	Field mustard	cytosol	30.17	29.83
Bra005411.1-P	Field mustard	cytosol	41.09	25.67

Protein Annotations

EnsemblPlants:Bra016843.1	EnsemblPlants:Bra016843.1-P	EnsemblPlantsGene:Bra016843	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00025465DE	UniProt:M4DK15	MapMan:35.1	:

Description

AT4G38940 (E=3e-041) | kelch repeat-containing F-box family protein

Coordinates

chrA08:-:20254342..20255452

Molecular Weight (calculated)

39069.2 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.080

Length

348 amino acids

Sequence
(BLAST)

001: MCELMEQLSE LSVSPLIPSL PNDVTLDIVA RVPRSHYPTL SLVSKSFRKL IASSKLYKRR SQLGINQHRL FAVLRNSNSG DFSLYILHRK LNCTNRLVYA
101: FNDIDVLSID CTSHTVHPIA DIPQRMAYKV VNAVGKKVYV LGDSFCHVIE EGGGWWKGWR KAVTVFDAET QSWGAKLVKE DMAIGLGPFW SDSVVMEGKV
201: YMKGCINRNS FVYGPVGKKW EVMDEVMNSK DWEGACVVDD VLYYHDCSEK AVLRAFDPKQ RCWSVVSGLE EFLAAETAKS KWCDAVSYGE KKLALFFPKK
301: HEGSKVICCA EIALERRQGG EIWGKMESCD VVVDDGVSEL VKCVAVTV

Best Arabidopsis Sequence Match ( AT4G38940.1 )
(BLAST)

001: MSSPIIIRAP KKQPPEPPCL ISLLPEEIVV DIVARVPRCY YPTLSQVSRR FRSLVASPEI YKRRSFFGCT EQCLYIAISK DQTSDIHWFT LCRKPNGQQF
101: SGTTASDHRL VHIPTLPPMP MHGSYVGIGS NIFVMGGFCN WKITSSVSLI DCRTHTAQTL PNMPKAVAFP VTELIDRKIY VIGGSDTLSP MKSPSRIMMV
201: YDTDTEMWQL RARPDWEAGK KWFSSVVIGG KIYMRTYHNS FVCDPNDTSC DRDEVLHSKE WWSACVIDDV LYYYDVRENC LRAYDPKQRA WGVVKGFEGL
301: LPVACKWSKT VSYTGGKLVL FLQKTEKTEI WCAEIAVERR EGGEIWGKVE WCNVVLSGNF HIMDCVAVVL

Arabidopsis Description

F-box/kelch-repeat protein At4g38940 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.