Factsheet for Bra022777.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84860	Canola	cytosol	99.43	99.43
Bra022778.1-P	Field mustard	cytosol	62.04	61.69
Bra021684.1-P	Field mustard	cytosol	51.27	52.01
Bra005410.1-P	Field mustard	cytosol	50.71	49.86
Bra021683.1-P	Field mustard	mitochondrion	52.97	49.6
Bra004072.1-P	Field mustard	cytosol, plastid	51.27	49.59
Bra000669.1-P	Field mustard	cytosol	20.11	48.63
Bra032070.1-P	Field mustard	cytosol, peroxisome, plastid	48.44	48.03
Bra021607.1-P	Field mustard	cytosol	47.03	47.84
Bra022790.1-P	Field mustard	plasma membrane	42.49	46.88
Bra022024.1-P	Field mustard	cytosol	20.96	46.54
Bra021609.1-P	Field mustard	cytosol	46.74	45.83
Bra022791.1-P	Field mustard	cytosol	45.04	45.82
Bra021610.1-P	Field mustard	cytosol	45.89	45.51
Bra005412.1-P	Field mustard	cytosol	46.18	45.4
Bra033997.1-P	Field mustard	cytosol	29.75	45.26
Bra005142.1-P	Field mustard	cytosol	44.19	44.83
Bra000664.1-P	Field mustard	cytosol, nucleus, plastid	43.91	42.82
Bra004774.1-P	Field mustard	cytosol	41.93	41.81
Bra021608.1-P	Field mustard	cytosol	39.66	41.42
Bra033585.1-P	Field mustard	cytosol, plastid	42.21	41.05
Bra000668.1-P	Field mustard	cytosol	38.53	40.96
Bra000665.1-P	Field mustard	cytosol	42.49	40.87
Bra016843.1-P	Field mustard	cytosol	39.94	40.52
Bra020387.1-P	Field mustard	cytosol	41.64	39.84
Bra039467.1-P	Field mustard	cytosol	39.38	39.38
Bra010511.1-P	Field mustard	cytosol	20.11	38.17
Bra001029.1-P	Field mustard	cytosol	36.83	36.93
Bra005411.1-P	Field mustard	cytosol	50.42	31.96

Protein Annotations

EnsemblPlants:Bra022777.1	EnsemblPlants:Bra022777.1-P	EnsemblPlantsGene:Bra022777	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	PFAM:PF00646	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI00025401D7	UniProt:M4E1X7	MapMan:35.1	:	:

Description

AT4G38940 (E=1e-048) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:7007135..7008196

Molecular Weight (calculated)

40507.1 Da

IEP (calculated)

6.821

GRAVY (calculated)

-0.130

Length

353 amino acids

Sequence
(BLAST)

001: MSSSTTMAKE EQSSKPLSLI TSLPQDVIVD ILARISRFDY PTLSLVCKHF QSIVTSPEIF TRRALLGRTE HCLYVVLCLQ NHTRIYILRK NKTNGDTPLV
101: LIPSLPAMPL YLNFVAAGSR IYAFARKSDY EMMTLSIDCG SHSVQPFPSI PTHLNLIVAG VIEGRIYGVG CRFSEEWEKV MVVFDTKTQV WEPGMISVMK
201: EGFMCGCVVM ADKMYTRDYA NSFVYDPKEN KWEKDEMLNL HKWENACVVD DVLYYLDCNE KELRAYDGKR RCWQVVKGLE ALLPETRRRK EWSQTVNYDG
301: KLALFYPKEN CEIWCAEISL ETRQGGEIWG TVECCRHLVT SQSCFMKALD VVV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.