Factsheet for Bra015630.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra010354.1-P
Bra011055.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G78100.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G78100.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G78100.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G78100.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G78100.1	Bra018757.1-P	AT3G60010.1	12169662
AT1G78100.1	Bra010354.1-P	AT4G28720.1	21798944
AT1G78100.1	Bra011055.1-P	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87476	Canola	cytosol	96.88	96.88
CDX88418	Canola	cytosol	94.08	94.08
AT1G78100.1	Thale cress	cytosol	75.08	72.16
Bra008345.1-P	Field mustard	cytosol	69.47	70.35
Bra031373.1-P	Field mustard	cytosol	59.19	58.64
Bra016384.1-P	Field mustard	cytosol	35.2	56.5
Bra012314.1-P	Field mustard	cytosol	54.52	55.03
VIT_18s0001g05310.t01	Wine grape	cytosol	45.48	48.67
Solyc04g072930.1.1	Tomato	cytosol	47.04	44.41
PGSC0003DMT400024512	Potato	cytosol	47.04	44.41
Zm00001d006501_P001	Maize	cytosol	23.05	33.95
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	34.89	32.18
TraesCS1B01G318500.1	Wheat	cytosol	35.2	31.74
TraesCS1A01G307800.1	Wheat	cytosol	35.2	31.74
HORVU1Hr1G068570.1	Barley	cytosol	34.89	31.73
HORVU0Hr1G030450.1	Barley	cytosol	34.89	31.73
GSMUA_Achr7P21580_001	Banana	cytosol	34.89	31.73
TraesCS1D01G307200.1	Wheat	cytosol	34.89	31.46
Os01t0812200-01	Rice	cytosol	34.27	31.16
Zm00001d038537_P001	Maize	cytosol	34.27	31.07
TraesCS3B01G368000.1	Wheat	cytosol	33.96	30.79
TraesCS3D01G518800.1	Wheat	cytosol	30.22	30.6
GSMUA_Achr10P...	Banana	cytosol	33.64	30.51
EES19721	Sorghum	cytosol	33.64	30.51
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	35.2	30.46
TraesCS3D01G329900.1	Wheat	cytosol	33.64	30.34
GSMUA_Achr3P18400_001	Banana	cytosol	34.27	30.3
EER94941	Sorghum	cytosol, peroxisome, plastid	35.83	30.26
HORVU4Hr1G052070.1	Barley	cytosol	34.27	29.97
TraesCS4B01G177100.1	Wheat	cytosol	34.58	29.92
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	34.27	29.89
Os03t0321300-01	Rice	cytosol	35.51	29.69
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	32.71	29.66
GSMUA_Achr6P32090_001	Banana	cytosol	32.4	29.46
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	33.96	29.14
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	32.4	28.97
Bra013303.1-P	Field mustard	cytosol	33.96	28.91
Zm00001d043125_P001	Maize	cytosol	31.46	28.86
Bra022022.1-P	Field mustard	cytosol	33.33	28.84
EES01639	Sorghum	cytosol	31.46	28.53
Zm00001d028957_P001	Maize	cytosol	30.84	28.45
Bra025034.1-P	Field mustard	cytosol	33.02	28.34
Zm00001d043016_P001	Maize	plastid	21.18	26.67
Zm00001d047573_P001	Maize	plastid	35.83	26.44
Os05t0490300-01	Rice	mitochondrion	35.2	25.11
GSMUA_Achr6P15980_001	Banana	mitochondrion	34.58	14.88

Protein Annotations

EnsemblPlants:Bra015630.1	EnsemblPlants:Bra015630.1-P	EnsemblPlantsGene:Bra015630	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002541B81	UniProt:M4DGK5	MapMan:19.2.2.8.1.4.6	:

Description

AT1G78100 (E=2e-124) | F-box family protein

Coordinates

chrA07:+:21670131..21671096

Molecular Weight (calculated)

35227.3 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.139

Length

321 amino acids

Sequence
(BLAST)

001: MDAFDAIPNH VVIDILNKVA DVKTLIRCRS VSKRFNSLAA QSDSLLLQLD QILGAAEPEP EVNSPVASFF RSIFKSILPI FSRSAKPAET PKSPAQILAG
101: FNRIRNLDVE LYGGDANLEK GAAVKWKAEF GETLKSSVIV AFRSATVNAS ATESPVNAVE TDSEFVCGLK TRVVWTINAL MAASTRHHLM GDLVKEHKEM
201: ERLTVRDRDE EGTVVMSAAG MKEYREAEAR VDEKGLGVER VRDRTEVPNV RMSMRHAPML KLKSGICLEA ATLVVVRPSG VSSDDNDAEL ATEAFAADCM
301: YGEAVTALLK RRRNVLEMNS F

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.