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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plastid 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03360_001
GSMUA_Achr1P24210_001
GSMUA_Achr2P04250_001
GSMUA_Achr4P25050_001
GSMUA_Achr5P20550_001
GSMUA_Achr8P12830_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr11P... AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr1P03360_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr1P24210_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr2P04250_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr4P25050_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr5P20550_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_Achr8P12830_001 AT4G28720.1 21798944
AT1G78100.1 GSMUA_AchrUn_... AT4G28720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 77.69 81.03
GSMUA_Achr7P21580_001 Banana cytosol 67.77 69.69
GSMUA_Achr6P32090_001 Banana cytosol 65.29 67.14
GSMUA_Achr10P... Banana cytosol 65.29 66.95
GSMUA_Achr2P17340_001 Banana cytosol 44.9 45.79
GSMUA_Achr4P22940_001 Banana cytosol 46.83 45.58
GSMUA_Achr4P31500_001 Banana cytosol 41.32 45.05
VIT_18s0001g05310.t01 Wine grape cytosol 37.19 45.0
GSMUA_Achr7P07910_001 Banana cytosol 47.38 44.91
GSMUA_Achr5P02540_001 Banana cytosol 41.32 44.78
GSMUA_Achr11P... Banana extracellular 8.54 40.79
GSMUA_Achr6P15980_001 Banana mitochondrion 77.96 37.94
GSMUA_Achr7P01170_001 Banana mitochondrion 42.42 37.65
Bra016384.1-P Field mustard cytosol 20.39 37.0
VIT_06s0009g03690.t01 Wine grape cytosol 34.71 36.84
AT1G22220.1 Thale cress cytosol 31.68 36.62
CDY46634 Canola cytosol 27.55 35.97
PGSC0003DMT400024512 Potato cytosol 33.61 35.88
Solyc04g072930.1.1 Tomato cytosol 33.61 35.88
VIT_06s0009g03680.t01 Wine grape cytosol 20.39 35.58
VIT_06s0009g03670.t01 Wine grape cytosol 33.33 35.48
CDY21348 Canola cytosol 31.13 34.88
Bra012314.1-P Field mustard cytosol 30.3 34.59
CDX88418 Canola cytosol 30.58 34.58
CDX87476 Canola cytosol 30.3 34.27
Bra015630.1-P Field mustard cytosol 30.3 34.27
Bra031373.1-P Field mustard cytosol 30.58 34.26
CDY00435 Canola cytosol 29.75 33.96
CDY38235 Canola cytosol 30.3 33.95
CDY41488 Canola cytosol 29.75 33.86
AT1G78100.1 Thale cress cytosol 31.13 33.83
CDY26850 Canola cytosol 27.55 33.56
CDX91668 Canola cytosol 29.2 33.23
CDY14629 Canola cytosol 23.97 31.87
Bra008345.1-P Field mustard cytosol 27.55 31.55
GSMUA_Achr10P... Banana cytosol 24.24 30.56
PGSC0003DMT400097155 Potato cytosol 28.93 30.0
CDY32130 Canola cytosol 18.18 24.35
Protein Annotations
EnsemblPlants:GSMUA_Achr3P18400_001EnsemblPlants:GSMUA_Achr3T18400_001EnsemblPlantsGene:GSMUA_Achr3G18400_001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810PANTHER:PTHR31215PANTHER:PTHR31215:SF3
PFAM:PF12937SUPFAM:SSF81383UniParc:UPI0002948309UniProt:M0SFQ6MapMan:19.2.2.8.1.4.6:
Description
F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18400_001]
Coordinates
chr3:-:19853338..19854429
Molecular Weight (calculated)
40549.2 Da
IEP (calculated)
8.843
GRAVY (calculated)
-0.136
Length
363 amino acids
Sequence
(BLAST)
001: MCLIAQLERT QTKSRIHADP SLHQDHFDRI PDSLVLLIFN KLADVRSLGR CSAVSKRFNA LVPLVHNVYV KIDRVVSIDG DSFDALDLSL PKPRTLFAHL
101: LKLILFAILQ PLHYLQNVHG WNKPLLPQLS HHSPRQVLKN FTHVRNLRME LPAGDVKTED GVFLKWRAEF GSTLQNCVIL GGTMMDYRPA SANLEGGMED
201: NGSIPESFYT NGGLKLRVVW TISSLIAAST RHYLLRQIIE EHPTLSSLVL TDADGQGTLT MGVEQLKEFR EKPLAMSASS NRTQVPASYM KLRYAPFLEL
301: PDGMGMQGAT LVAIKPAGEG TSGGHYSRKE AEAFICRAFD DPLRDTVKAL VKNRTYLLEM NGF
Best Arabidopsis Sequence Match ( AT4G18380.1 )
(BLAST)
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Arabidopsis Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.