Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41488 | Canola | cytosol | 94.67 | 94.67 |
| CDY38235 | Canola | cytosol | 76.18 | 75.0 |
| CDY00435 | Canola | cytosol | 74.61 | 74.84 |
| CDY21348 | Canola | cytosol | 73.98 | 72.84 |
| CDY46634 | Canola | cytosol | 61.44 | 70.5 |
| AT1G22220.1 | Thale cress | cytosol | 65.2 | 66.24 |
| CDX87476 | Canola | cytosol | 58.62 | 58.26 |
| CDX88418 | Canola | cytosol | 58.62 | 58.26 |
| CDY26850 | Canola | cytosol | 53.92 | 57.72 |
| CDY14629 | Canola | cytosol | 48.9 | 57.14 |
| CDY32130 | Canola | cytosol | 47.34 | 55.72 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 42.63 | 45.33 |
| Solyc04g072930.1.1 | Tomato | cytosol | 43.26 | 40.59 |
| PGSC0003DMT400024512 | Potato | cytosol | 42.95 | 40.29 |
| CDX78848 | Canola | cytosol | 10.34 | 34.02 |
| Zm00001d006501_P001 | Maize | cytosol | 22.88 | 33.49 |
| Os01t0812200-01 | Rice | cytosol | 36.36 | 32.86 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 36.36 | 32.86 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 36.36 | 32.86 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 36.36 | 32.86 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 32.29 | 32.49 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 36.05 | 32.3 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 36.05 | 32.3 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 35.74 | 32.02 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 35.42 | 31.92 |
| GSMUA_Achr10P... | Banana | cytosol | 34.8 | 31.36 |
| Zm00001d038537_P001 | Maize | cytosol | 34.8 | 31.36 |
| EES01639 | Sorghum | cytosol | 34.8 | 31.36 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 34.8 | 31.18 |
| EES19721 | Sorghum | cytosol | 34.48 | 31.07 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 34.8 | 30.92 |
| Zm00001d043125_P001 | Maize | cytosol | 32.92 | 30.0 |
| CDY33458 | Canola | cytosol | 33.86 | 30.0 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 33.23 | 29.94 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 34.17 | 29.7 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 34.48 | 29.41 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 31.97 | 29.31 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 33.23 | 29.2 |
| CDX77641 | Canola | cytosol | 32.92 | 29.01 |
| CDY43956 | Canola | cytosol | 33.86 | 28.95 |
| CDX87738 | Canola | cytosol | 33.86 | 28.95 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 32.92 | 28.3 |
| Os03t0321300-01 | Rice | cytosol | 33.86 | 28.12 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 32.29 | 28.07 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 33.23 | 27.89 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 32.29 | 27.76 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 30.41 | 27.48 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 31.66 | 27.45 |
| Zm00001d028957_P001 | Maize | cytosol | 29.78 | 27.3 |
| Os05t0490300-01 | Rice | mitochondrion | 36.99 | 26.22 |
| Zm00001d043016_P001 | Maize | plastid | 20.38 | 25.49 |
| Zm00001d047573_P001 | Maize | plastid | 34.48 | 25.29 |
| CDX99469 | Canola | nucleus | 16.61 | 23.35 |
| CDX78847 | Canola | cytosol | 15.99 | 21.43 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 32.6 | 13.94 |
Protein Annotations
| EnsemblPlants:CDX91668 | EnsemblPlantsGene:GSBRNA2T00153127001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| PANTHER:PTHR31215 | ProteinID:CDX91668 | ProteinID:CDX91668.1 | SUPFAM:SSF81383 | UniParc:UPI0004EE6584 | MapMan:19.2.2.8.1.4.6 |
Description
BnaC08g05870D
Coordinates
chrLK031869:+:16366..17325
Molecular Weight (calculated)
35192.5 Da
IEP (calculated)
7.505
GRAVY (calculated)
-0.218
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFDGLPDP IVVDILDKVG DVKTLLRCSS LSKRFYSLVP QSESLTLRLD QVVTTESPPD SPVSNFFKSA CKPFHGLFSL FSKPAKPIPA TNLSPVIPSK
101: LLSRFDRIKN LDVELPGEDA KPEKGAGIKW KAEFGKTLKT CVVVAFRSAS TVSSPGVESD AEFVTGLKTR VEWTINALMA ASTRHHLMSL VVKEHKEMES
201: LVMHERGGEG TVVMKSEGLR EFRKTEAARD QELEERVEKK QRSVVPSVRM SMRHAPSLKL KSGICLESAT LVIVRPSEEY SDVGDDELAT EAFAGSCMYG
301: EAVVALLKRN KNTLDMNSF
101: LLSRFDRIKN LDVELPGEDA KPEKGAGIKW KAEFGKTLKT CVVVAFRSAS TVSSPGVESD AEFVTGLKTR VEWTINALMA ASTRHHLMSL VVKEHKEMES
201: LVMHERGGEG TVVMKSEGLR EFRKTEAARD QELEERVEKK QRSVVPSVRM SMRHAPSLKL KSGICLESAT LVIVRPSEEY SDVGDDELAT EAFAGSCMYG
301: EAVVALLKRN KNTLDMNSF
001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
Arabidopsis Description
AUF2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7K5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.