CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025034.1-P	Field mustard	cytosol	97.22	93.58
CDX78848	Canola	cytosol	24.17	89.69
CDX77641	Canola	cytosol	89.17	88.67
AT5G46170.1	Thale cress	cytosol, plastid	87.22	79.49
CDX87738	Canola	cytosol	81.94	79.09
CDY43956	Canola	cytosol	80.83	78.02
CDX99890	Canola	cytosol, golgi, nucleus	72.5	71.12
VIT_10s0003g03880.t01	Wine grape	cytosol	78.33	70.68
CDY26286	Canola	cytosol, nucleus, vacuole	73.06	70.32
KRH11156	Soybean	cytosol, nucleus, vacuole	73.06	68.31
KRH21091	Soybean	cytosol	73.33	68.22
GSMUA_Achr7P07910_001	Banana	cytosol	61.39	57.7
GSMUA_Achr2P17340_001	Banana	cytosol	55.83	56.46
GSMUA_Achr4P22940_001	Banana	cytosol	58.33	56.3
GSMUA_Achr4P31500_001	Banana	cytosol	51.39	55.56
GSMUA_Achr5P02540_001	Banana	cytosol	51.39	55.22
Os05t0510400-02	Rice	cytosol	60.56	52.91
Os01t0770400-01	Rice	cytosol	57.22	52.02
TraesCS3A01G296700.1	Wheat	cytosol	57.5	51.62
TraesCS1B01G342700.1	Wheat	cytosol	59.17	51.33
TraesCS3B01G340400.1	Wheat	cytosol	57.22	51.24
TraesCS3D01G306000.1	Wheat	cytosol	56.94	51.12
TraesCS1D01G331400.1	Wheat	cytosol	60.56	51.05
Zm00001d000314_P001	Maize	cytosol	58.33	50.97
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	59.44	50.83
Zm00001d010705_P001	Maize	cytosol	57.5	50.24
GSMUA_Achr11P...	Banana	extracellular	10.56	50.0
KXG22318	Sorghum	cytosol	58.06	49.18
OQU78753	Sorghum	cytosol	50.56	49.06
Zm00001d043324_P001	Maize	cytosol	53.89	48.38
Zm00001d012644_P001	Maize	cytosol	55.0	48.29
EES03683	Sorghum	cytosol	55.0	47.37
EES01093	Sorghum	cytosol	54.17	46.65
GSMUA_Achr7P01170_001	Banana	mitochondrion	51.94	45.72
HORVU1Hr1G077600.2	Barley	plastid	59.17	43.74
CDX99469	Canola	nucleus	27.5	43.61
HORVU3Hr1G075050.2	Barley	plastid	56.94	42.8
GSMUA_Achr10P...	Banana	cytosol	33.33	41.67
CDX78847	Canola	cytosol	24.72	37.4
CDY00435	Canola	cytosol	30.83	34.91
CDY26850	Canola	cytosol	28.61	34.56
CDY46634	Canola	cytosol	26.67	34.53
CDY41488	Canola	cytosol	30.28	34.17
CDX91668	Canola	cytosol	30.0	33.86
CDX88418	Canola	cytosol	29.72	33.33
CDY21348	Canola	cytosol	30.0	33.33
CDY38235	Canola	cytosol	30.0	33.33
CDY14629	Canola	cytosol	25.28	33.33
CDX87476	Canola	cytosol	29.44	33.02
CDY32130	Canola	cytosol	19.44	25.83
Zm00001d006500_P001	Maize	cytosol	28.06	24.94

Protein Annotations

EnsemblPlants:CDY33458	EnsemblPlantsGene:GSBRNA2T00054697001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	PFAM:PF12937
PFscan:PS50181	ProteinID:CDY33458	ProteinID:CDY33458.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI0004EDBBFA	UniProt:A0A078H9C1	MapMan:19.2.2.8.1.4.6	:	:	:

Description

BnaA06g36150DBnaA06g36150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9C1]

Coordinates

chrLK032315:-:21500..23044

Molecular Weight (calculated)

39474.5 Da

IEP (calculated)

7.876

GRAVY (calculated)

-0.092

Length

360 amino acids

Sequence
(BLAST)

001: MARSDPPSRI HPEPRQTDHF DHLPDSILLL VFNKISDVKS LGRCCVVSRR FHSLVTQVEN VLIRVDCVIS DDDNSSLSSI KSRSAASAPF SNLFRLVVGG
101: IVKPLQALGQ FLGARRSGDE GGEIEQGGVT HHSPTQVLKN FEEIRYLRIE LPSGELGIDD GVLLKWRAEF GSTLDHCVIL GASSVIQPSP TRVSQPVESS
201: DDTGSIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI IAEHKTLRSL VLSDSDGQGV LCMNRDQLEE LRVKPLSASS ASKRTLVPAL NMRLWYAPTL
301: ELPDGTVLKG ATLVAIRPSE SKKEVSDVLW VSSAAFGEPY KAAVKMLVKR KTYCLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.