Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY33458 | Canola | cytosol | 93.58 | 97.22 |
AT5G46170.1 | Thale cress | cytosol, plastid | 85.29 | 80.76 |
Bra022022.1-P | Field mustard | cytosol | 78.61 | 79.25 |
Bra013303.1-P | Field mustard | cytosol | 75.67 | 75.07 |
VIT_10s0003g03880.t01 | Wine grape | cytosol | 76.47 | 71.68 |
Bra032364.1-P | Field mustard | cytosol, nucleus, vacuole | 70.59 | 70.59 |
KRH21091 | Soybean | cytosol | 72.73 | 70.28 |
KRH11156 | Soybean | cytosol, nucleus, vacuole | 71.12 | 69.09 |
GSMUA_Achr7P07910_001 | Banana | cytosol | 59.89 | 58.49 |
GSMUA_Achr4P22940_001 | Banana | cytosol | 57.22 | 57.37 |
GSMUA_Achr2P17340_001 | Banana | cytosol | 54.01 | 56.74 |
GSMUA_Achr4P31500_001 | Banana | cytosol | 49.47 | 55.56 |
GSMUA_Achr5P02540_001 | Banana | cytosol | 49.73 | 55.52 |
Os05t0510400-02 | Rice | cytosol | 60.16 | 54.61 |
TraesCS1B01G342700.1 | Wheat | cytosol | 58.02 | 52.29 |
Zm00001d000314_P001 | Maize | cytosol | 57.49 | 52.18 |
Os01t0770400-01 | Rice | cytosol | 55.08 | 52.02 |
TraesCS1D01G331400.1 | Wheat | cytosol | 59.09 | 51.76 |
TraesCS3A01G296700.1 | Wheat | cytosol | 55.35 | 51.62 |
TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 58.02 | 51.54 |
TraesCS3B01G340400.1 | Wheat | cytosol | 55.08 | 51.24 |
Zm00001d010705_P001 | Maize | cytosol | 56.42 | 51.21 |
TraesCS3D01G306000.1 | Wheat | cytosol | 54.81 | 51.12 |
GSMUA_Achr11P... | Banana | extracellular | 10.16 | 50.0 |
KXG22318 | Sorghum | cytosol | 56.42 | 49.65 |
OQU78753 | Sorghum | cytosol | 48.66 | 49.06 |
Zm00001d043324_P001 | Maize | cytosol | 52.14 | 48.63 |
Zm00001d012644_P001 | Maize | cytosol | 52.94 | 48.29 |
EES03683 | Sorghum | cytosol | 52.94 | 47.37 |
EES01093 | Sorghum | cytosol | 52.14 | 46.65 |
GSMUA_Achr7P01170_001 | Banana | mitochondrion | 50.53 | 46.21 |
HORVU1Hr1G077600.2 | Barley | plastid | 58.02 | 44.56 |
GSMUA_Achr10P... | Banana | cytosol | 33.16 | 43.06 |
HORVU3Hr1G075050.2 | Barley | plastid | 54.81 | 42.8 |
Bra016384.1-P | Field mustard | cytosol | 20.32 | 38.0 |
Bra012314.1-P | Field mustard | cytosol | 29.95 | 35.22 |
Bra031373.1-P | Field mustard | cytosol | 29.14 | 33.64 |
Bra015630.1-P | Field mustard | cytosol | 28.34 | 33.02 |
Bra008345.1-P | Field mustard | cytosol | 26.47 | 31.23 |
Zm00001d006500_P001 | Maize | cytosol | 26.74 | 24.69 |
Protein Annotations
EnsemblPlants:Bra025034.1 | EnsemblPlants:Bra025034.1-P | EnsemblPlantsGene:Bra025034 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 |
PFAM:PF12937 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000253FBDF | UniProt:M4E8C8 |
MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
AT4G18380 (E=5e-142) | F-box family protein
Coordinates
chrA06:+:24819842..24820966
Molecular Weight (calculated)
40768.9 Da
IEP (calculated)
7.824
GRAVY (calculated)
-0.068
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSDPPSRI HPEPQRIDHF DHLPDSILLL VFNKISDVKS LGRCCVVSRR FHSLVTQVEN VLIRVDCVIS DDDNSSLSSI KSRSAASGPF SNLFRLVVGG
101: IVKPLQALGQ FLGARRSCGS SSSSSSSLSI SGDEGGEIEQ GGVTHHSPTQ VLKNFEEIRY LRIELPSGEL GIDDGVLLKW RAEFGSTLDH CVILGASSVI
201: QPNPIRVSQP VESSDDTGSI PESFYTNGGL KLRVVWTISS LIAASARHYL LQPIIAEHKT LRSLVLSDSD GQGVLCMNRD QLEELRVKPL SASSASKRTL
301: VPALNMRLWY APTLELPDGT VLKGATLVAI RPSESKKEVS DVLWVSSAAF GEPYKAAVKM LVKRKTYCLE MNSF
101: IVKPLQALGQ FLGARRSCGS SSSSSSSLSI SGDEGGEIEQ GGVTHHSPTQ VLKNFEEIRY LRIELPSGEL GIDDGVLLKW RAEFGSTLDH CVILGASSVI
201: QPNPIRVSQP VESSDDTGSI PESFYTNGGL KLRVVWTISS LIAASARHYL LQPIIAEHKT LRSLVLSDSD GQGVLCMNRD QLEELRVKPL SASSASKRTL
301: VPALNMRLWY APTLELPDGT VLKGATLVAI RPSESKKEVS DVLWVSSAAF GEPYKAAVKM LVKRKTYCLE MNSF
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.