Factsheet for Bra013303.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78848	Canola	cytosol	25.73	100.0
AT4G18380.1	Thale cress	cytosol	80.64	80.0
Bra022022.1-P	Field mustard	cytosol	76.39	77.63
Bra025034.1-P	Field mustard	cytosol	75.07	75.67
VIT_10s0003g03880.t01	Wine grape	cytosol	74.54	70.43
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	69.5	70.05
KRH11156	Soybean	cytosol, nucleus, vacuole	70.29	68.83
KRH21091	Soybean	cytosol	69.5	67.7
GSMUA_Achr2P17340_001	Banana	cytosol	54.64	57.87
GSMUA_Achr4P31500_001	Banana	cytosol	49.87	56.46
GSMUA_Achr4P22940_001	Banana	cytosol	55.7	56.3
GSMUA_Achr5P02540_001	Banana	cytosol	49.87	56.12
GSMUA_Achr7P07910_001	Banana	cytosol	56.5	55.61
TraesCS3A01G296700.1	Wheat	cytosol	56.23	52.87
TraesCS3B01G340400.1	Wheat	cytosol	56.23	52.74
TraesCS3D01G306000.1	Wheat	cytosol	55.97	52.62
Os01t0770400-01	Rice	cytosol	54.91	52.27
Os05t0510400-02	Rice	cytosol	56.76	51.94
OQU78753	Sorghum	cytosol	50.66	51.48
Zm00001d000314_P001	Maize	cytosol	56.23	51.46
TraesCS1B01G342700.1	Wheat	cytosol	56.5	51.33
Zm00001d010705_P001	Maize	cytosol	55.97	51.21
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	56.76	50.83
Zm00001d043324_P001	Maize	cytosol	53.58	50.37
TraesCS1D01G331400.1	Wheat	cytosol	56.76	50.12
GSMUA_Achr11P...	Banana	extracellular	10.08	50.0
Zm00001d012644_P001	Maize	cytosol	53.85	49.51
KXG22318	Sorghum	cytosol	55.17	48.94
EES03683	Sorghum	cytosol	53.85	48.56
EES01093	Sorghum	cytosol	53.32	48.09
GSMUA_Achr7P01170_001	Banana	mitochondrion	49.07	45.23
HORVU1Hr1G077600.2	Barley	plastid	57.82	44.76
HORVU3Hr1G075050.2	Barley	plastid	55.44	43.63
GSMUA_Achr10P...	Banana	cytosol	31.03	40.62
Bra016384.1-P	Field mustard	cytosol	20.69	39.0
Bra012314.1-P	Field mustard	cytosol	30.5	36.16
PGSC0003DMT400002031	Potato	extracellular	15.12	35.62
Bra031373.1-P	Field mustard	cytosol	30.24	35.19
Bra015630.1-P	Field mustard	cytosol	28.91	33.96
Bra008345.1-P	Field mustard	cytosol	26.79	31.86
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	13.26	31.25
Zm00001d006500_P001	Maize	cytosol	26.79	24.94

Protein Annotations

EnsemblPlants:Bra013303.1	EnsemblPlants:Bra013303.1-P	EnsemblPlantsGene:Bra013303	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2
PFAM:PF12937	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002546087	UniProt:M4D9Z3	MapMan:19.2.2.8.1.4.6

Description

AT4G18380 (E=3e-142) | F-box family protein

Coordinates

chrA01:+:4866066..4867199

Molecular Weight (calculated)

40683.6 Da

IEP (calculated)

5.842

GRAVY (calculated)

-0.056

Length

377 amino acids

Sequence
(BLAST)

001: MAVIHRSDPL SRIHPEPLDP PDFFDHLPDS ILLLVFNRIG DVKALGRCGV VSKRFHSLVP QVENVVVRVD CVISDDDDPS SLSPDKPRSS ASPFSAIFRL
101: IFKPLHALTQ LLSTKRSSSS SSSPSPSSSL SITGGGEDGE IEQGGVTHHS PTQVLKNFNE IRLLRIELPA GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVATDPPPSD GDSAAAAVED NGSIPESFYT NGGLKLRVVW TISSLIAASA RHYLLQPIIA EHKTLDSLVL TDTDGQGVLC MNRDQLEELR VKPLSASSAS
301: KRTLVPALNM RLWYAPSLEL PDGTVLKGAT LVAIRPSESK KEVCDVSWVS SAFDGAYGVA AKMLVKRRTY CLEMNSF

Best Arabidopsis Sequence Match ( AT4G18380.1 )
(BLAST)

001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF

Arabidopsis Description

F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.