Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41488 | Canola | cytosol | 97.5 | 61.13 |
| CDY32130 | Canola | cytosol | 70.0 | 51.66 |
| Bra012314.1-P | Field mustard | cytosol | 75.5 | 47.48 |
| Bra031373.1-P | Field mustard | cytosol | 75.0 | 46.3 |
| AT1G22220.1 | Thale cress | cytosol | 67.5 | 42.99 |
| Bra008345.1-P | Field mustard | cytosol | 56.0 | 35.33 |
| Bra015630.1-P | Field mustard | cytosol | 56.5 | 35.2 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 45.0 | 30.0 |
| Solyc04g072930.1.1 | Tomato | cytosol | 45.5 | 26.76 |
| PGSC0003DMT400024512 | Potato | cytosol | 45.5 | 26.76 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 41.5 | 23.51 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 40.5 | 22.95 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 40.5 | 22.95 |
| EES01639 | Sorghum | cytosol | 40.5 | 22.88 |
| Os01t0812200-01 | Rice | cytosol | 40.0 | 22.66 |
| GSMUA_Achr10P... | Banana | cytosol | 39.5 | 22.32 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 39.5 | 22.19 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 39.5 | 22.19 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 39.0 | 22.03 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 39.0 | 21.91 |
| Zm00001d043125_P001 | Maize | cytosol | 38.0 | 21.71 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 38.5 | 21.63 |
| Zm00001d043016_P001 | Maize | plastid | 27.5 | 21.57 |
| Zm00001d038537_P001 | Maize | cytosol | 37.5 | 21.19 |
| EES19721 | Sorghum | cytosol | 37.0 | 20.9 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 37.5 | 20.89 |
| Bra022022.1-P | Field mustard | cytosol | 38.5 | 20.75 |
| Bra013303.1-P | Field mustard | cytosol | 39.0 | 20.69 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 36.5 | 20.62 |
| Bra032364.1-P | Field mustard | cytosol, nucleus, vacuole | 38.5 | 20.59 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 32.5 | 20.5 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 37.0 | 20.39 |
| Bra025034.1-P | Field mustard | cytosol | 38.0 | 20.32 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 35.0 | 20.11 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 37.0 | 19.95 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 36.0 | 19.62 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 36.0 | 19.41 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 35.5 | 19.29 |
| Os03t0321300-01 | Rice | cytosol | 37.0 | 19.27 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 33.5 | 18.98 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 35.5 | 18.68 |
| Os05t0490300-01 | Rice | mitochondrion | 39.5 | 17.56 |
| Zm00001d047573_P001 | Maize | plastid | 36.0 | 16.55 |
| Zm00001d028957_P001 | Maize | cytosol | 28.5 | 16.38 |
| Zm00001d006501_P001 | Maize | cytosol | 17.0 | 15.6 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 36.5 | 9.79 |
Protein Annotations
| EnsemblPlants:Bra016384.1 | EnsemblPlants:Bra016384.1-P | EnsemblPlantsGene:Bra016384 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | PANTHER:PTHR31215 | SUPFAM:SSF81383 | UniParc:UPI00025465D0 | UniProt:M4DIQ7 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
AT1G22220 (E=6e-077) | F-box family protein
Coordinates
chrA08:-:18178021..18178623
Molecular Weight (calculated)
22064.8 Da
IEP (calculated)
9.205
GRAVY (calculated)
-0.132
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVFDGLPDP IVVYILDKVG DVKTLLRCSS LSKRFNSLVP QSESLILRLD QVVTTESPPD SPVSNFFKSV CKPFHGLFSL FSKPAKPIPT TNLSPVIPSK
101: LLSRFDRIKN LDVELPGGDA KPEKGAGIKW KAEFGKTLKT CVVVAFRSAS TVSSPDGESD AEFVTGLKTR VEWTIKALMA ASTRHHLMSQ VVKEHKEMYE
101: LLSRFDRIKN LDVELPGGDA KPEKGAGIKW KAEFGKTLKT CVVVAFRSAS TVSSPDGESD AEFVTGLKTR VEWTIKALMA ASTRHHLMSQ VVKEHKEMYE
001: MDVFDGLPDP IIVDILNKVG DVKTLLRCSS LSKRFNSLVP QSESLTLRLD HSVSDSPVVT SIFRSLFNGL VSLLSKPAKP ITITTLSPSL PFKILSRFDR
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
101: IRNLDVELPG GDVKLEKGAA VKWKAEFGKT LKSCVIVAFR SAGTVSSPVA VEGESDAEFV TGLKTRVVWT ISALMAASSR HYLMREVVKE HEEIESLVMR
201: DKEREGTVVM NEEGLKELRN TEARVEDEER VVKNKRSVVP SVRMSMRHAP SLKLKSGICL ESATLVIVRP SGADFEVGDD AELATEAFVG DCMYGEAVVA
301: LLKCKKNALE MNSF
Arabidopsis Description
AUF2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7K5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.