Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19721 | Sorghum | cytosol | 95.2 | 95.2 |
| Zm00001d038537_P001 | Maize | cytosol | 93.5 | 93.5 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 85.88 | 85.39 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 85.31 | 84.83 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 85.31 | 84.83 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 84.18 | 84.42 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 83.62 | 83.85 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 72.88 | 81.39 |
| Zm00001d043125_P001 | Maize | cytosol | 75.71 | 76.57 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 72.6 | 72.8 |
| GSMUA_Achr10P... | Banana | cytosol | 70.62 | 70.62 |
| Os05t0490300-01 | Rice | mitochondrion | 85.88 | 67.56 |
| Zm00001d006501_P001 | Maize | cytosol | 37.01 | 60.09 |
| Zm00001d028957_P001 | Maize | cytosol | 47.74 | 48.56 |
| Zm00001d043016_P001 | Maize | plastid | 33.62 | 46.67 |
| Zm00001d047573_P001 | Maize | plastid | 55.08 | 44.83 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 37.01 | 43.67 |
| Zm00001d010705_P001 | Maize | cytosol | 45.76 | 39.32 |
| Zm00001d043324_P001 | Maize | cytosol | 44.35 | 39.15 |
| Zm00001d000314_P001 | Maize | cytosol | 45.48 | 39.08 |
| Zm00001d012644_P001 | Maize | cytosol | 44.07 | 38.05 |
| Bra016384.1-P | Field mustard | cytosol | 20.62 | 36.5 |
| Solyc04g072930.1.1 | Tomato | cytosol | 35.03 | 36.47 |
| PGSC0003DMT400024512 | Potato | cytosol | 34.46 | 35.88 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 34.46 | 35.67 |
| CDY46634 | Canola | cytosol | 27.68 | 35.25 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 20.34 | 34.62 |
| CDY21348 | Canola | cytosol | 31.64 | 34.57 |
| CDY26850 | Canola | cytosol | 28.81 | 34.23 |
| AT1G22220.1 | Thale cress | cytosol | 30.23 | 34.08 |
| CDY00435 | Canola | cytosol | 30.23 | 33.65 |
| Bra012314.1-P | Field mustard | cytosol | 30.23 | 33.65 |
| Bra031373.1-P | Field mustard | cytosol | 30.79 | 33.64 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 32.2 | 33.43 |
| CDX88418 | Canola | cytosol | 30.23 | 33.33 |
| CDY38235 | Canola | cytosol | 30.51 | 33.33 |
| AT1G78100.1 | Thale cress | cytosol | 31.36 | 33.23 |
| CDX91668 | Canola | cytosol | 29.94 | 33.23 |
| CDY41488 | Canola | cytosol | 29.94 | 33.23 |
| CDX87476 | Canola | cytosol | 29.66 | 32.71 |
| Bra015630.1-P | Field mustard | cytosol | 29.66 | 32.71 |
| Bra008345.1-P | Field mustard | cytosol | 28.53 | 31.86 |
| CDY14629 | Canola | cytosol | 24.29 | 31.5 |
| PGSC0003DMT400097155 | Potato | cytosol | 29.94 | 30.29 |
| CDY32130 | Canola | cytosol | 18.64 | 24.35 |
| Zm00001d006500_P001 | Maize | cytosol | 22.88 | 20.0 |
Protein Annotations
| EMBL:BT040344 | EnsemblPlants:Zm00001d010640_P001 | EnsemblPlants:Zm00001d010640_T001 | EnsemblPlantsGene:Zm00001d010640 | EntrezGene:100279399 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | ProteinID:AQK94542.1 |
| SUPFAM:SSF81383 | UniParc:UPI00017B8374 | UniProt:B4FTA6 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-box protein
Coordinates
chr8:-:122789933..122790997
Molecular Weight (calculated)
38973.2 Da
IEP (calculated)
8.840
GRAVY (calculated)
-0.173
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPKARIHAD PVREVDHFDC LPDSLVLLIL NKVEDVRSLG RCYAVSKRLC GLVSLVHDVY VKIDRVVAVD GDAEGTLNLS SPKPRSIFSH FLKLMLFTII
101: KPFHNMRSPN GTARPLFPQL SQHSPAQVLR NFTHVRNLRI ELPSGDVGTE EGVLLKWRAE YGSTLENCVI LGGTRVDRKP VGGEHEPALE DNGSMPESFY
201: TNGGLKLRVV WTISSLIAAS TRHYLLRSII NGHPTLQSLV LTDADGQGTL CMGAKQLEEF RENQLSTSAC SNRTQVPACN MKLKYAPYVE LPGGMALQGA
301: TLVAIKPSPE GSNGSHPNRK EAEGFVFGAF DGPFKAAVKA LMKRRTYLLE MNGF
101: KPFHNMRSPN GTARPLFPQL SQHSPAQVLR NFTHVRNLRI ELPSGDVGTE EGVLLKWRAE YGSTLENCVI LGGTRVDRKP VGGEHEPALE DNGSMPESFY
201: TNGGLKLRVV WTISSLIAAS TRHYLLRSII NGHPTLQSLV LTDADGQGTL CMGAKQLEEF RENQLSTSAC SNRTQVPACN MKLKYAPYVE LPGGMALQGA
301: TLVAIKPSPE GSNGSHPNRK EAEGFVFGAF DGPFKAAVKA LMKRRTYLLE MNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.