Factsheet for GSMUA_Achr7P21580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03360_001
GSMUA_Achr1P24210_001
GSMUA_Achr2P04250_001
GSMUA_Achr4P25050_001
GSMUA_Achr5P20550_001
GSMUA_Achr8P12830_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr11P...	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr1P03360_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr1P24210_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr2P04250_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr4P25050_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr5P20550_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_Achr8P12830_001	AT4G28720.1	21798944
AT1G78100.1	GSMUA_AchrUn_...	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	81.02	80.79
Zm00001d038537_P001	Maize	cytosol	74.79	74.58
HORVU1Hr1G068570.1	Barley	cytosol	74.5	74.5
EES19721	Sorghum	cytosol	74.5	74.29
HORVU0Hr1G030450.1	Barley	cytosol	74.22	74.22
TraesCS1D01G307200.1	Wheat	cytosol	74.79	74.16
TraesCS1B01G318500.1	Wheat	cytosol	74.79	74.16
TraesCS1A01G307800.1	Wheat	cytosol	74.79	74.16
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	72.8	72.6
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	70.54	71.55
Os01t0812200-01	Rice	cytosol	70.54	70.54
TraesCS3B01G368000.1	Wheat	cytosol	70.54	70.34
TraesCS3D01G518800.1	Wheat	cytosol	62.89	70.03
TraesCS3D01G329900.1	Wheat	cytosol	69.69	69.1
EES01639	Sorghum	cytosol	69.12	68.93
Zm00001d043125_P001	Maize	cytosol	67.42	68.0
GSMUA_Achr3P18400_001	Banana	cytosol	69.69	67.77
TraesCS3A01G336900.1	Wheat	cytosol, peroxisome, plastid	68.56	67.41
GSMUA_Achr6P32090_001	Banana	cytosol	65.44	65.44
Os05t0490300-01	Rice	mitochondrion	74.22	58.22
GSMUA_Achr2P17340_001	Banana	cytosol	47.59	47.19
GSMUA_Achr7P07910_001	Banana	cytosol	49.58	45.69
GSMUA_Achr4P31500_001	Banana	cytosol	43.06	45.65
GSMUA_Achr4P22940_001	Banana	cytosol	48.16	45.58
GSMUA_Achr5P02540_001	Banana	cytosol	42.78	45.07
VIT_18s0001g05310.t01	Wine grape	cytosol	37.39	44.0
Bra016384.1-P	Field mustard	cytosol	23.51	41.5
CDY46634	Canola	cytosol	31.44	39.93
GSMUA_Achr7P01170_001	Banana	mitochondrion	45.33	39.12
AT1G22220.1	Thale cress	cytosol	33.99	38.22
Bra012314.1-P	Field mustard	cytosol	33.99	37.74
CDY21348	Canola	cytosol	34.56	37.65
CDY00435	Canola	cytosol	33.71	37.42
CDY41488	Canola	cytosol	33.43	36.99
GSMUA_Achr11P...	Banana	extracellular	7.93	36.84
PGSC0003DMT400024512	Potato	cytosol	35.41	36.76
CDY38235	Canola	cytosol	33.43	36.42
CDX91668	Canola	cytosol	32.86	36.36
Solyc04g072930.1.1	Tomato	cytosol	34.84	36.18
Bra031373.1-P	Field mustard	cytosol	33.14	36.11
VIT_06s0009g03690.t01	Wine grape	cytosol	34.84	35.96
VIT_06s0009g03680.t01	Wine grape	cytosol	20.96	35.58
CDY26850	Canola	cytosol	30.03	35.57
CDX88418	Canola	cytosol	32.29	35.51
VIT_06s0009g03670.t01	Wine grape	cytosol	33.71	34.9
CDX87476	Canola	cytosol	31.73	34.89
Bra015630.1-P	Field mustard	cytosol	31.73	34.89
AT1G78100.1	Thale cress	cytosol	32.58	34.43
Bra008345.1-P	Field mustard	cytosol	29.75	33.12
GSMUA_Achr6P15980_001	Banana	mitochondrion	69.12	32.71
CDY14629	Canola	cytosol	25.21	32.6
GSMUA_Achr10P...	Banana	cytosol	24.93	30.56
PGSC0003DMT400097155	Potato	cytosol	29.18	29.43
CDY32130	Canola	cytosol	20.4	26.57

Protein Annotations

EnsemblPlants:GSMUA_Achr7P21580_001	EnsemblPlants:GSMUA_Achr7T21580_001	EnsemblPlantsGene:GSMUA_Achr7G21580_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR31215	PANTHER:PTHR31215:SF3	PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF81383
UniParc:UPI000296EA77	UniProt:M0TJJ4	MapMan:19.2.2.8.1.4.6	:	:	:

Description

Putative F-box protein At4g18380 [Source:GMGC_GENE;Acc:GSMUA_Achr7G21580_001]

Coordinates

chr7:+:24321757..24323029

Molecular Weight (calculated)

39045.9 Da

IEP (calculated)

9.155

GRAVY (calculated)

-0.200

Length

353 amino acids

Sequence
(BLAST)

001: MQPKARVYAD PSHDLDQFDR LPDSIVLLIL NKLADVRSLG RCSAVSKRFN SLVFLVHDVY VKIDRVVTVD GDSDDPLSQS SPRHRNLFCN FLKLMLFTLL
101: KPFHNLRSTN CGNKPVFPQL SHHSPAQVLK NFTHVRNLRI ELPAGDVGTE EGVLLKWRAE FGSTLQSCVI LGGTRIDRKL VSPEHESPVE DSGSIPDSFY
201: TNGGLKLRVF WTISSLIAAS TRHYLLRPII KEHPTLKSLA LTDADGQGTL SMGEEQLKEF REKPVAASAS TNRTQVPACN MKLKYAPYLD IPGGMALQGA
301: TVVTIRPSSE GSSSSNISSE TDAFISGAFD GPFKAAVRTL MKRRTYLLEM NGF

Best Arabidopsis Sequence Match ( AT1G30200.1 )
(BLAST)

001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF

Arabidopsis Description

F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.