Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01639 | Sorghum | cytosol | 93.71 | 92.66 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 79.43 | 78.53 |
| Os01t0812200-01 | Rice | cytosol | 78.57 | 77.9 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 79.14 | 77.81 |
| Zm00001d038537_P001 | Maize | cytosol | 78.29 | 77.4 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 76.57 | 75.71 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 77.14 | 75.21 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 68.0 | 67.42 |
| GSMUA_Achr10P... | Banana | cytosol | 63.71 | 62.99 |
| Zm00001d006501_P001 | Maize | cytosol | 36.0 | 57.8 |
| Zm00001d028957_P001 | Maize | cytosol | 48.0 | 48.28 |
| Zm00001d047573_P001 | Maize | plastid | 56.57 | 45.52 |
| Zm00001d043016_P001 | Maize | plastid | 33.14 | 45.49 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 36.29 | 42.33 |
| Zm00001d043324_P001 | Maize | cytosol | 44.57 | 38.9 |
| Zm00001d000314_P001 | Maize | cytosol | 45.14 | 38.35 |
| Zm00001d012644_P001 | Maize | cytosol | 44.57 | 38.05 |
| Bra016384.1-P | Field mustard | cytosol | 21.71 | 38.0 |
| Zm00001d010705_P001 | Maize | cytosol | 44.0 | 37.38 |
| CDY46634 | Canola | cytosol | 28.57 | 35.97 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 35.14 | 35.96 |
| AT1G22220.1 | Thale cress | cytosol | 31.43 | 35.03 |
| CDY21348 | Canola | cytosol | 32.0 | 34.57 |
| CDY26850 | Canola | cytosol | 29.14 | 34.23 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 20.0 | 33.65 |
| Bra012314.1-P | Field mustard | cytosol | 30.57 | 33.65 |
| CDY38235 | Canola | cytosol | 31.14 | 33.64 |
| Solyc04g072930.1.1 | Tomato | cytosol | 32.57 | 33.53 |
| Bra031373.1-P | Field mustard | cytosol | 30.86 | 33.33 |
| CDY00435 | Canola | cytosol | 30.29 | 33.33 |
| PGSC0003DMT400024512 | Potato | cytosol | 32.29 | 33.24 |
| AT1G78100.1 | Thale cress | cytosol | 31.43 | 32.93 |
| CDX91668 | Canola | cytosol | 30.0 | 32.92 |
| CDY41488 | Canola | cytosol | 30.0 | 32.92 |
| CDY14629 | Canola | cytosol | 25.43 | 32.6 |
| CDX88418 | Canola | cytosol | 29.14 | 31.78 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 30.86 | 31.67 |
| Bra008345.1-P | Field mustard | cytosol | 28.57 | 31.55 |
| Bra015630.1-P | Field mustard | cytosol | 28.86 | 31.46 |
| CDX87476 | Canola | cytosol | 28.86 | 31.46 |
| PGSC0003DMT400097155 | Potato | cytosol | 28.57 | 28.57 |
| CDY32130 | Canola | cytosol | 20.86 | 26.94 |
| Zm00001d006500_P001 | Maize | cytosol | 22.29 | 19.26 |
Protein Annotations
| EMBL:BT084653 | EnsemblPlants:Zm00001d043125_P001 | EnsemblPlants:Zm00001d043125_T001 | EnsemblPlantsGene:Zm00001d043125 | EntrezGene:100501153 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | ProteinID:ONM37058.1 |
| SUPFAM:SSF81383 | UniParc:UPI0001A4C0EE | UniProt:C4J1F6 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
F-box protein
Coordinates
chr3:-:189774392..189775444
Molecular Weight (calculated)
38367.4 Da
IEP (calculated)
8.391
GRAVY (calculated)
-0.075
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAKARIHAD PVHEFDQFDC LHDSLVLLIL NKLEDVRSLG RCSAVSKRFS GLVLLVHDVR VKIDHVVTVD GGADDALNLS SPKPHNIISH LFKMMLFAIA
101: KPFHDMRSPI SAGRLLFPQL SQHSPVQVLK NFSHVRNLQV ELPSGDVAVE EGVLLKWRAE YGSTLQSCVI LGGTLVDRKA AGSGHEPSPD DKGSMPESFY
201: TNGGLKLRVV WTISCLIAAS TRHYLLRSII NDHPTLRSLV LADAEGQGAL SMGAEQLNDF REHQLSASPC SNRTQVPACN MKLKYAQYLE LPGGLALQGA
301: TLLVTKPASD GHGNRKEVEA FVSSAFDGPL RFAAKALMKR RTYLLEMNGF
101: KPFHDMRSPI SAGRLLFPQL SQHSPVQVLK NFSHVRNLQV ELPSGDVAVE EGVLLKWRAE YGSTLQSCVI LGGTLVDRKA AGSGHEPSPD DKGSMPESFY
201: TNGGLKLRVV WTISCLIAAS TRHYLLRSII NDHPTLRSLV LADAEGQGAL SMGAEQLNDF REHQLSASPC SNRTQVPACN MKLKYAQYLE LPGGLALQGA
301: TLLVTKPASD GHGNRKEVEA FVSSAFDGPL RFAAKALMKR RTYLLEMNGF
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
Arabidopsis Description
F-box protein At1g30200 [Source:UniProtKB/Swiss-Prot;Acc:Q9C534]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.