Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 55.13 | 54.97 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 28.45 | 46.63 |
| Zm00001d006501_P001 | Maize | cytosol | 23.17 | 36.24 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 30.79 | 35.0 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 35.48 | 34.77 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 35.78 | 34.56 |
| PGSC0003DMT400097155 | Potato | cytosol | 35.19 | 34.29 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 34.9 | 33.71 |
| Zm00001d038537_P001 | Maize | cytosol | 34.9 | 33.62 |
| EES19721 | Sorghum | cytosol | 34.6 | 33.33 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 35.48 | 33.33 |
| Os01t0812200-01 | Rice | cytosol | 33.72 | 32.58 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 33.43 | 32.2 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 33.43 | 32.02 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 33.14 | 32.01 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 33.14 | 32.01 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 33.14 | 31.74 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 33.14 | 31.74 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 29.33 | 31.55 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 32.55 | 31.18 |
| EES01639 | Sorghum | cytosol | 32.26 | 31.07 |
| GSMUA_Achr10P... | Banana | cytosol | 32.26 | 31.07 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 33.43 | 31.06 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 33.72 | 31.0 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 33.72 | 31.0 |
| Os03t0321300-01 | Rice | cytosol | 34.9 | 30.99 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 33.43 | 30.98 |
| Zm00001d043125_P001 | Maize | cytosol | 31.67 | 30.86 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 31.96 | 30.79 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 35.78 | 30.58 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 31.67 | 30.08 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 33.43 | 30.0 |
| Zm00001d028957_P001 | Maize | cytosol | 29.91 | 29.31 |
| Zm00001d047573_P001 | Maize | plastid | 35.19 | 27.59 |
| Zm00001d043016_P001 | Maize | plastid | 19.35 | 25.88 |
| Os05t0490300-01 | Rice | mitochondrion | 34.02 | 25.78 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 35.48 | 16.22 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100256828 | wikigene:100256828 | MapMan:19.2.2.8.1.4.6 | ProteinID:CCB49033 | ProteinID:CCB49033.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6HA13 | EMBL:FN595504 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009914 | GO:GO:0009987 | InterPro:IPR001810 |
| EntrezGene:LOC100256828 | wikigene:LOC100256828 | PFAM:PF00646 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF12 | SUPFAM:SSF81383 |
| UniParc:UPI00019838B0 | ArrayExpress:VIT_06s0009g03670 | EnsemblPlantsGene:VIT_06s0009g03670 | EnsemblPlants:VIT_06s0009g03670.t01 | unigene:Vvi.13260 | RefSeq:XP_002279458 |
| RefSeq:XP_002279458.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:16925040..16926240
Molecular Weight (calculated)
38868.0 Da
IEP (calculated)
6.947
GRAVY (calculated)
-0.357
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEDQGPDDH FDRLSDELVT LIFNKVLDAK SLCRCSVVSK RFASLIPQTD NVSLIVPSSN NSKPKRGTFF IVFLKYLVGK FITKPLQFLY QTVVPKLSVN
101: SDEDETYQFT TEVLRNFINI KRLSIQLPCH GDELGSKGTD YFLRWKAEFG RELESCVVLG ATSFHRSSST PSSHKKHKQL HEPMSATDEL KTRVVWMISS
201: LIAASTRHWL LKQIIADIPM NPQSVMISDS SKQGRLIMGE EQFKELRRSM NPTAPVERTM VPAVRVKLWH VPVLELPASG RVMNGATLIV IRPAERTMKM
301: ESEDEGLGDC FEGEEEEEDL REAVREMLKE KKPYKIEMDS L
101: SDEDETYQFT TEVLRNFINI KRLSIQLPCH GDELGSKGTD YFLRWKAEFG RELESCVVLG ATSFHRSSST PSSHKKHKQL HEPMSATDEL KTRVVWMISS
201: LIAASTRHWL LKQIIADIPM NPQSVMISDS SKQGRLIMGE EQFKELRRSM NPTAPVERTM VPAVRVKLWH VPVLELPASG RVMNGATLIV IRPAERTMKM
301: ESEDEGLGDC FEGEEEEEDL REAVREMLKE KKPYKIEMDS L
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.