CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11777
EES15155
KXG35000
OQU88910

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78100.1	EES11777	AT4G28720.1	21798944
AT1G78100.1	EES15155	AT4G28720.1	21798944
AT1G78100.1	KXG35000	AT4G28720.1	21798944
AT1G78100.1	OQU88910	AT4G28720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006501_P001	Maize	cytosol	47.89	83.49
Os03t0321300-01	Rice	cytosol	79.74	78.91
Zm00001d028957_P001	Maize	cytosol	71.32	77.87
HORVU4Hr1G052070.1	Barley	cytosol	75.0	77.66
TraesCS4B01G177100.1	Wheat	cytosol	75.26	77.09
TraesCS4D01G178800.1	Wheat	cytosol, peroxisome, plastid	74.21	76.63
TraesCS4A01G127600.1	Wheat	cytosol, peroxisome, plastid	72.63	74.39
Zm00001d047573_P001	Maize	plastid	85.0	74.25
Zm00001d043016_P001	Maize	plastid	45.53	67.84
EES19721	Sorghum	cytosol	55.26	59.32
EES01639	Sorghum	cytosol	54.74	58.76
GSMUA_Achr6P32090_001	Banana	cytosol	52.89	56.94
VIT_18s0001g05310.t01	Wine grape	cytosol	36.58	46.33
KXG22318	Sorghum	cytosol	45.0	40.24
OQU78753	Sorghum	cytosol	38.16	39.08
EES03683	Sorghum	cytosol	41.58	37.8
EES01093	Sorghum	cytosol	41.05	37.32
CDY26850	Canola	cytosol	28.95	36.91
Solyc04g072930.1.1	Tomato	cytosol	32.89	36.76
VIT_06s0009g03690.t01	Wine grape	cytosol	32.89	36.55
PGSC0003DMT400024512	Potato	cytosol	32.63	36.47
CDX88418	Canola	cytosol	30.53	36.14
CDY46634	Canola	cytosol	26.32	35.97
Bra015630.1-P	Field mustard	cytosol	30.26	35.83
CDX87476	Canola	cytosol	30.26	35.83
Bra016384.1-P	Field mustard	cytosol	18.68	35.5
Bra012314.1-P	Field mustard	cytosol	29.47	35.22
CDY14629	Canola	cytosol	25.26	35.16
AT1G22220.1	Thale cress	cytosol	28.95	35.03
AT1G78100.1	Thale cress	cytosol	30.53	34.73
VIT_06s0009g03680.t01	Wine grape	cytosol	18.95	34.62
CDY00435	Canola	cytosol	28.95	34.59
CDY21348	Canola	cytosol	29.21	34.26
Bra031373.1-P	Field mustard	cytosol	28.95	33.95
CDY41488	Canola	cytosol	28.16	33.54
Bra008345.1-P	Field mustard	cytosol	27.89	33.44
VIT_06s0009g03670.t01	Wine grape	cytosol	30.0	33.43
CDY38235	Canola	cytosol	28.42	33.33
CDX91668	Canola	cytosol	27.89	33.23
PGSC0003DMT400097155	Potato	cytosol	28.68	31.14
CDY32130	Canola	cytosol	18.68	26.2

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EntrezGene:8083700	UniProt:C5X1T2	EnsemblPlants:EER94941	ProteinID:EER94941
ProteinID:EER94941.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506
GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	InterPro:IPR001810	PFAM:PF12937
PANTHER:PTHR31215	PANTHER:PTHR31215:SF5	EnsemblPlantsGene:SORBI_3001G389300	SUPFAM:SSF81383	unigene:Sbi.8034	UniParc:UPI0001A82E6C
RefSeq:XP_002467943.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:67599333..67603108

Molecular Weight (calculated)

40290.3 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.066

Length

380 amino acids

Sequence
(BLAST)

001: MQSKHRIFAE DLLLAAEGED HFDRVPDSLV LLIFNKLADA RSLGRCSAVS RRFNALVPLV DDACLRIDRV IPADAADGGD ALGGLAGGPR PRAVLSHLLK
101: AMLQAVLKPF AHCDAKSAAH KHALLQQGQQ QHHSPAQVLK NFSSIRNLRM ELPVSDVGTD DGVVLKWKAV FGSTLQSCVI LGGTKVERAA SGSANASAAP
201: PPAPHADAGD AAAAGGPDDS GSIPESFYTN GGLKLRVVWT ISSLIAAATR HYLLREIVKE HPTLEQVALT DANGQGTLSM GRDQLREFRD KPLAAAAAAN
301: RTQVPACNMK LRYAPLLELS DGTRIHGATL VVIKPVGDAA GVGGRKELDE FVAGAFDGPF REAVAALSKR RTYLLEMNGF

Best Arabidopsis Sequence Match ( AT1G78100.1 )
(BLAST)

001: MDAFDAIPDP VVIDILNRVG DVKTLIRCRS VSKRFNSLAT QSESLLLQLD QILGATESDS EIDSPIASFF RSLFKSIHGL LPPIFSKPAN SDEILTRSPK
101: TPAQILSGFE RIRNLEVELY GGDVKLEKGA AVKWKAEFGK TLKSCVIVAF RSATVNTSAA TEAAAVVDGV VESDSEFVCG LKTRVVWTIS ALMAASTRHY
201: LMRDLVKDHK EMEKLIVRDS DGEGTVVMDA AGMKEYRETE VRGDNKESER VGERTVVPSV RMSMRHAPSL MLKSGICLEA ATLVVVRPTG VASDDNDVEL
301: VTEAFAGDGD DCMYGEAVTA LLKRRRNVLE MNSF

Arabidopsis Description

AUF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZX8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.