Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 54.97 | 55.13 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 30.12 | 49.52 |
| Zm00001d006501_P001 | Maize | cytosol | 23.98 | 37.61 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 37.13 | 36.49 |
| EES01639 | Sorghum | cytosol | 37.43 | 36.16 |
| GSMUA_Achr6P32090_001 | Banana | cytosol | 37.13 | 35.98 |
| Zm00001d038537_P001 | Maize | cytosol | 37.13 | 35.88 |
| EES19721 | Sorghum | cytosol | 36.84 | 35.59 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 30.99 | 35.33 |
| Zm00001d043125_P001 | Maize | cytosol | 35.96 | 35.14 |
| HORVU0Hr1G030450.1 | Barley | cytosol | 36.26 | 35.13 |
| HORVU1Hr1G068570.1 | Barley | cytosol | 36.26 | 35.13 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 35.96 | 34.84 |
| Os01t0812200-01 | Rice | cytosol | 35.96 | 34.84 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 36.26 | 34.83 |
| GSMUA_Achr3P18400_001 | Banana | cytosol | 36.84 | 34.71 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 35.96 | 34.55 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 35.96 | 34.55 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 35.67 | 34.46 |
| TraesCS3B01G368000.1 | Wheat | cytosol | 35.38 | 34.18 |
| TraesCS3D01G518800.1 | Wheat | cytosol | 31.58 | 34.07 |
| TraesCS3D01G329900.1 | Wheat | cytosol | 35.38 | 33.99 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 38.89 | 33.33 |
| TraesCS4B01G177100.1 | Wheat | cytosol | 35.96 | 33.15 |
| PGSC0003DMT400097155 | Potato | cytosol | 33.92 | 33.14 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 35.38 | 32.97 |
| EER94941 | Sorghum | cytosol, peroxisome, plastid | 36.55 | 32.89 |
| TraesCS4A01G127600.1 | Wheat | cytosol, peroxisome, plastid | 35.67 | 32.88 |
| TraesCS4D01G178800.1 | Wheat | cytosol, peroxisome, plastid | 35.38 | 32.88 |
| TraesCS3A01G336900.1 | Wheat | cytosol, peroxisome, plastid | 34.21 | 32.59 |
| GSMUA_Achr10P... | Banana | cytosol | 33.63 | 32.49 |
| Zm00001d028957_P001 | Maize | cytosol | 32.75 | 32.18 |
| Os03t0321300-01 | Rice | cytosol | 35.67 | 31.77 |
| Zm00001d047573_P001 | Maize | plastid | 35.96 | 28.28 |
| Zm00001d043016_P001 | Maize | plastid | 20.76 | 27.84 |
| Os05t0490300-01 | Rice | mitochondrion | 36.26 | 27.56 |
| GSMUA_Achr6P15980_001 | Banana | mitochondrion | 36.55 | 16.76 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100255138 | EntrezGene:100260225 | wikigene:100260225 | MapMan:19.2.2.8.1.4.6 | ProteinID:CBI24218 |
| ProteinID:CBI24218.3 | UniProt:D7T139 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | EMBL:FN595504 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009914 | GO:GO:0009987 |
| InterPro:IPR001810 | EntrezGene:LOC100260225 | wikigene:LOC100260225 | PFAM:PF12937 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF12 |
| SUPFAM:SSF81383 | TIGR:TC53805 | UniParc:UPI00019838AF | ArrayExpress:VIT_06s0009g03690 | EnsemblPlantsGene:VIT_06s0009g03690 | EnsemblPlants:VIT_06s0009g03690.t01 |
| unigene:Vvi.15965 | RefSeq:XP_002275356 | RefSeq:XP_002275356.1 | RefSeq:XP_019076005.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:16933003..16934058
Molecular Weight (calculated)
38253.7 Da
IEP (calculated)
7.526
GRAVY (calculated)
-0.088
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPDHNEDDH FDGLSDELLS LIFSKVLDAE SLCRCSAVSK RFASLIPLVD AVLLTIPPPK SKPNRGLFLN FGNSLQVTNF IAKLLQFLHQ IVLPQSSVSF
101: HSNEGSIHHF SSEVLKNFSH ITSLHIQLPS HGGELGANGT GSLLKWEAEF GRELESCVVL GATYFERSNK ISRIPKRQDR LHESSLATDE LKLRVAWMIS
201: CLFAASARHC LLKQIIADNP MMLRSLVIED GSKQGRLRMG EDQFKELRKC VNTRPPLERT KLPAICIKLW YVPLLELPAS GCVMKGATLI VIRPLNQVMK
301: MKSDGDLLAG AFDGEEEAEA LCEAVREILK EKKPYLMEMN SF
101: HSNEGSIHHF SSEVLKNFSH ITSLHIQLPS HGGELGANGT GSLLKWEAEF GRELESCVVL GATYFERSNK ISRIPKRQDR LHESSLATDE LKLRVAWMIS
201: CLFAASARHC LLKQIIADNP MMLRSLVIED GSKQGRLRMG EDQFKELRKC VNTRPPLERT KLPAICIKLW YVPLLELPAS GCVMKGATLI VIRPLNQVMK
301: MKSDGDLLAG AFDGEEEAEA LCEAVREILK EKKPYLMEMN SF
001: MAIILRSSDP LLSRIHPEPQ EIDHFDNLPD SILLLIFNNI GDVKALGRCS VVSKRFHSLI PQVENVFVRV DCVISDDDSS SLLSDKPRSA SAASPFSAIF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
101: RLVFKPLQAL GQFLKRSGSS SLPSGSSPSS LLISGGDDGE IEQGGVTHHS PTQVLKNFDE IKFLKIELPS GELGIDDGVL LKWRAEFGST LENCVILGAS
201: SVIPPTNSDK TEASSAPVAA VEDNGSIPES FYTNGGLKLR VVWTISSLIA ASARHYLLQP IIAEHKTLDS LVLTDVDGQG VLCMNRDQLE ELRVKPLSAS
301: SASKRTLVPA LNMRLWYAPS LELPDGTVLK GATLVAIRPS ESKKEVCDVS WVSSAFDEPY GVAAKMLVKR RTYCLEMNSF
Arabidopsis Description
F-box protein At4g18380 [Source:UniProtKB/Swiss-Prot;Acc:O49508]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.