Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G068570.1 | Barley | cytosol | 99.43 | 99.43 |
| TraesCS1B01G318500.1 | Wheat | cytosol | 95.18 | 94.38 |
| TraesCS1D01G307200.1 | Wheat | cytosol | 94.62 | 93.82 |
| TraesCS1A01G307800.1 | Wheat | cytosol | 94.62 | 93.82 |
| EES19721 | Sorghum | cytosol | 86.69 | 86.44 |
| Zm00001d038537_P001 | Maize | cytosol | 85.84 | 85.59 |
| Zm00001d010640_P001 | Maize | cytosol, peroxisome, plastid | 83.85 | 83.62 |
| GSMUA_Achr7P21580_001 | Banana | cytosol | 74.22 | 74.22 |
| GSMUA_Achr10P... | Banana | cytosol | 70.54 | 70.34 |
| Os05t0490300-01 | Rice | mitochondrion | 87.54 | 68.67 |
| HORVU4Hr1G052070.1 | Barley | cytosol | 58.64 | 56.4 |
| VIT_18s0001g05310.t01 | Wine grape | cytosol | 37.39 | 44.0 |
| Bra016384.1-P | Field mustard | cytosol | 22.95 | 40.5 |
| CDY46634 | Canola | cytosol | 29.46 | 37.41 |
| AT1G22220.1 | Thale cress | cytosol | 32.86 | 36.94 |
| CDY41488 | Canola | cytosol | 33.14 | 36.68 |
| Bra012314.1-P | Field mustard | cytosol | 32.86 | 36.48 |
| CDY38235 | Canola | cytosol | 33.43 | 36.42 |
| Bra031373.1-P | Field mustard | cytosol | 33.43 | 36.42 |
| CDY21348 | Canola | cytosol | 33.43 | 36.42 |
| CDX91668 | Canola | cytosol | 32.86 | 36.36 |
| VIT_06s0009g03690.t01 | Wine grape | cytosol | 35.13 | 36.26 |
| CDY00435 | Canola | cytosol | 32.58 | 36.16 |
| CDX88418 | Canola | cytosol | 32.29 | 35.51 |
| PGSC0003DMT400024512 | Potato | cytosol | 33.71 | 35.0 |
| CDY26850 | Canola | cytosol | 29.46 | 34.9 |
| CDX87476 | Canola | cytosol | 31.73 | 34.89 |
| Bra015630.1-P | Field mustard | cytosol | 31.73 | 34.89 |
| Solyc04g072930.1.1 | Tomato | cytosol | 33.43 | 34.71 |
| HORVU3Hr1G075050.2 | Barley | plastid | 46.74 | 34.45 |
| HORVU1Hr1G077600.2 | Barley | plastid | 47.03 | 34.09 |
| AT1G78100.1 | Thale cress | cytosol | 31.73 | 33.53 |
| VIT_06s0009g03680.t01 | Wine grape | cytosol | 19.55 | 33.17 |
| VIT_06s0009g03670.t01 | Wine grape | cytosol | 32.01 | 33.14 |
| PGSC0003DMT400097155 | Potato | cytosol | 32.29 | 32.57 |
| Bra008345.1-P | Field mustard | cytosol | 29.18 | 32.49 |
| CDY14629 | Canola | cytosol | 24.93 | 32.23 |
| CDY32130 | Canola | cytosol | 20.4 | 26.57 |
Protein Annotations
| EMBL:AK354192 | EnsemblPlants:HORVU0Hr1G030450.1 | EnsemblPlantsGene:HORVU0Hr1G030450 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF3 | SUPFAM:SSF81383 | UniParc:UPI0002004659 | UniProt:F2CRE0 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CRE0]
Coordinates
chrchrUn:-:176702379..176703440
Molecular Weight (calculated)
38737.7 Da
IEP (calculated)
7.633
GRAVY (calculated)
-0.135
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPKARIHAD PALELEDDRF DCLPDSIVLL ILNKVEDVRS LGRCSAASKR FNGLVPLVHD VCVKIDHVVA VDGDAEDPLD LSSPKPRNIL SHFLKLMLFT
101: IIKPFHNARG AGRPLFPQLA HHSPAQVLRS FTHVRNLHIE LPSGDVGTED GVLLKWRAEY GSTLQNCVIL GGTRVDRKPV GAEHEPSSED NGSMPESFYT
201: NGGLKLRVVW TISSLIAAST RHYLLRSIIK EHPTLVSLVL TDADGQGTLT MGAEQLKDFR ENQLSASACS NRTHVPACNM KLKYAPYLEL PEGIALQGAT
301: LVAIKPSTEG SNCGHISRKE TDAFISGAFD GPFKFAAKAL MKRRTYLLEM NGF
101: IIKPFHNARG AGRPLFPQLA HHSPAQVLRS FTHVRNLHIE LPSGDVGTED GVLLKWRAEY GSTLQNCVIL GGTRVDRKPV GAEHEPSSED NGSMPESFYT
201: NGGLKLRVVW TISSLIAAST RHYLLRSIIK EHPTLVSLVL TDADGQGTLT MGAEQLKDFR ENQLSASACS NRTHVPACNM KLKYAPYLEL PEGIALQGAT
301: LVAIKPSTEG SNCGHISRKE TDAFISGAFD GPFKFAAKAL MKRRTYLLEM NGF
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.