Factsheet for HORVU3Hr1G075050.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G340400.1	Wheat	cytosol	74.53	88.81
TraesCS3D01G306000.1	Wheat	cytosol	74.11	88.53
TraesCS3A01G296700.1	Wheat	cytosol	73.28	87.53
Os01t0770400-01	Rice	cytosol	63.47	76.77
OQU78753	Sorghum	cytosol	53.44	69.0
Zm00001d043324_P001	Maize	cytosol	56.99	68.08
EES03683	Sorghum	cytosol	59.29	67.94
Zm00001d012644_P001	Maize	cytosol	56.99	66.59
EES01093	Sorghum	cytosol	57.41	65.79
Solyc02g070480.2.1	Tomato	cytosol	26.1	65.1
CDX78848	Canola	cytosol	12.53	61.86
GSMUA_Achr4P31500_001	Banana	cytosol	42.17	60.66
GSMUA_Achr7P07910_001	Banana	cytosol	47.39	59.27
GSMUA_Achr5P02540_001	Banana	cytosol	41.34	59.1
GSMUA_Achr2P17340_001	Banana	cytosol	43.84	58.99
KRH11156	Soybean	cytosol, nucleus, vacuole	46.35	57.66
Bra022022.1-P	Field mustard	cytosol	44.47	57.41
GSMUA_Achr4P22940_001	Banana	cytosol	44.68	57.37
VIT_10s0003g03880.t01	Wine grape	cytosol	47.6	57.14
CDX87738	Canola	cytosol	44.47	57.1
AT5G46170.1	Thale cress	cytosol, plastid	46.97	56.96
CDY33458	Canola	cytosol	42.8	56.94
CDY43956	Canola	cytosol	44.26	56.84
CDX77641	Canola	cytosol	42.59	56.35
KRH21091	Soybean	cytosol	45.51	56.33
AT4G18380.1	Thale cress	cytosol	44.26	55.79
Bra013303.1-P	Field mustard	cytosol	43.63	55.44
HORVU1Hr1G077600.2	Barley	plastid	55.74	54.83
Bra025034.1-P	Field mustard	cytosol	42.8	54.81
PGSC0003DMT400054525	Potato	cytosol	41.54	54.22
CDX99890	Canola	cytosol, golgi, nucleus	41.13	53.68
AT1G30200.2	Thale cress	cytosol	42.38	53.56
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	41.75	53.48
CDY26286	Canola	cytosol, nucleus, vacuole	41.75	53.48
GSMUA_Achr11P...	Banana	extracellular	8.35	52.63
PGSC0003DMT400049024	Potato	cytosol	41.96	51.67
Solyc08g048430.2.1	Tomato	cytosol	34.66	50.92
GSMUA_Achr7P01170_001	Banana	mitochondrion	41.75	48.9
HORVU1Hr1G068570.1	Barley	cytosol	34.66	47.03
HORVU0Hr1G030450.1	Barley	cytosol	34.45	46.74
HORVU4Hr1G052070.1	Barley	cytosol	31.94	41.69
CDX99469	Canola	nucleus	17.12	36.12
CDX78847	Canola	cytosol	15.45	31.09
PGSC0003DMT400002031	Potato	extracellular	8.35	25.0
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	7.1	21.25

Protein Annotations

EnsemblPlants:HORVU3Hr1G075050.2	EnsemblPlantsGene:HORVU3Hr1G075050	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7	PFAM:PF12937
PFscan:PS50181	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000B47BEE9	UniProt:A0A287LPM6	MapMan:19.2.2.8.1.4.6

Description

No Description!

Coordinates

chrchr3H:+:561432288..561438786

Molecular Weight (calculated)

50964.1 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.118

Length

479 amino acids

Sequence
(BLAST)

001: PAPTTQGPSQ ERRGVKPKYT HDLASPRLTS RAAAVPCPVL CVCVPTIRSL LFHQKSPNSR PTHSRPAPGS RSAPPVGLAA GAMEEGREGW PSAAAEVVEE
101: GEEDQFDRLP DAVLLDVFNR IGDVKALGRC ALVSRRFHAL VPLVDSVFVR VDCVIPDEPA PSSAGSPQAA APSRGRGALA HIARLVLGGI VRPIQALGQI
201: LSPTLAIVSR RSVAPPPASP PPPAGDISHH SPSEVLRSFK ELRSLRIELP TGELGIDDGV LLKWKADFGS TLGSCVILGA SSVSSKPLPP PMSSPDAADS
301: EATSPDDSRE PEELASIPES LHTNGGLRLR VVWTISSLIA ASARHYLLQP IIADHEMLDS LNLTDADGQG VLTMDKRQLQ ELRVRPVSVS GNSHRTLMPA
401: LIMRLWYAPH IELPGGVLLK GATLVAIRPS DDVLREGGGV EAAGPAGASW ISDAFEEPYR TAAKVLFKRR TYSLEMNSF

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.