Factsheet for Solyc08g048430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049024	Potato	cytosol	85.28	71.47
CDX99890	Canola	cytosol, golgi, nucleus	60.12	53.41
KRH11156	Soybean	cytosol, nucleus, vacuole	61.66	52.21
KRH21091	Soybean	cytosol	61.66	51.94
VIT_10s0003g03880.t01	Wine grape	cytosol	63.5	51.88
AT1G30200.2	Thale cress	cytosol	59.2	50.92
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	57.98	50.53
CDY26286	Canola	cytosol, nucleus, vacuole	57.98	50.53
Solyc02g070480.2.1	Tomato	cytosol	29.75	50.52
GSMUA_Achr4P22940_001	Banana	cytosol	51.53	45.04
GSMUA_Achr7P07910_001	Banana	cytosol	51.53	43.86
GSMUA_Achr2P17340_001	Banana	cytosol	47.85	43.82
Os05t0510400-02	Rice	cytosol	53.99	42.72
GSMUA_Achr4P31500_001	Banana	cytosol	43.56	42.64
Os01t0770400-01	Rice	cytosol	51.53	42.42
GSMUA_Achr5P02540_001	Banana	cytosol	43.56	42.39
TraesCS3A01G296700.1	Wheat	cytosol	51.53	41.9
TraesCS3B01G340400.1	Wheat	cytosol	51.23	41.54
TraesCS3D01G306000.1	Wheat	cytosol	50.92	41.4
Zm00001d010705_P001	Maize	cytosol	51.23	40.53
Zm00001d000314_P001	Maize	cytosol	50.0	39.56
TraesCS1B01G342700.1	Wheat	cytosol	50.31	39.52
TraesCS1D01G331400.1	Wheat	cytosol	51.53	39.34
TraesCS1A01G329300.1	Wheat	cytosol, mitochondrion	50.61	39.19
KXG22318	Sorghum	cytosol	50.61	38.82
Zm00001d043324_P001	Maize	cytosol	47.24	38.4
GSMUA_Achr10P...	Banana	cytosol	33.74	38.19
Zm00001d012644_P001	Maize	cytosol	47.55	37.8
OQU78753	Sorghum	cytosol	42.94	37.74
EES03683	Sorghum	cytosol	47.24	36.84
EES01093	Sorghum	cytosol	46.32	36.12
HORVU1Hr1G077600.2	Barley	plastid	52.45	35.11
HORVU3Hr1G075050.2	Barley	plastid	50.92	34.66
GSMUA_Achr7P01170_001	Banana	mitochondrion	41.72	33.25
Solyc04g072930.1.1	Tomato	cytosol	30.67	29.41
Zm00001d006500_P001	Maize	cytosol	25.77	20.74
GSMUA_Achr11P...	Banana	extracellular	1.23	5.26

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009506	GO:GO:0009719	GO:GO:0009736	GO:GO:0009914	GO:GO:0009987	InterPro:IPR001810
UniProt:K4CKJ4	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR31215	PANTHER:PTHR31215:SF2	SUPFAM:SSF81383
EnsemblPlantsGene:Solyc08g048430.2	EnsemblPlants:Solyc08g048430.2.1	UniParc:UPI000276C86B	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:13001229..13002506

Molecular Weight (calculated)

35525.4 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.073

Length

326 amino acids

Sequence
(BLAST)

001: MGSSKSDLRS TIYPEPVDHF NQLPDPVLLL IFNKIGDVKT LGRCCGVCRR FHSLVPQVDN VVVRVDCVIS DDDDASSSSS SSSAAASSDK SRHPISSLFR
101: LVFLGLVKPF QSLTQLISIS SRRCTASSSL VDDDFEKYSV THHSPTQVLK NFDEIKLLRI ELPSGELGID EGALLKWRAD FGSTLDNCVI LGASSVIQPV
201: SIDDLVEEQC GNGSNSLGDG NGETDNGSIP ESFYTNGGLK LRVVWTISSL IAASARHYLL QPIIAEHKKL ASLVLTDVDG QGVLCMNREQ LEELRVKPLS
301: ASSQHLRSPM GRLQGCWLRG GLIVWR

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.