Factsheet for Zm00001d006500_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000314_P001	Maize	cytosol	40.0	39.32
Zm00001d010705_P001	Maize	cytosol	36.3	35.68
Solyc02g070480.2.1	Tomato	cytosol	14.81	31.25
CDX99469	Canola	nucleus	17.04	30.4
CDX78847	Canola	cytosol	17.28	29.41
Zm00001d043324_P001	Maize	cytosol	28.64	28.93
Bra022022.1-P	Field mustard	cytosol	25.93	28.3
CDY43956	Canola	cytosol	25.93	28.15
CDX87738	Canola	cytosol	25.93	28.15
CDY33458	Canola	cytosol	24.94	28.06
GSMUA_Achr10P...	Banana	cytosol	19.75	27.78
KRH21091	Soybean	cytosol	26.17	27.39
CDX77641	Canola	cytosol	24.44	27.35
Zm00001d012644_P001	Maize	cytosol	27.65	27.32
AT1G30200.2	Thale cress	cytosol	25.43	27.18
CDX99890	Canola	cytosol, golgi, nucleus	24.44	26.98
AT4G18380.1	Thale cress	cytosol	25.19	26.84
AT5G46170.1	Thale cress	cytosol, plastid	26.17	26.84
VIT_10s0003g03880.t01	Wine grape	cytosol	26.42	26.82
Bra013303.1-P	Field mustard	cytosol	24.94	26.79
KRH11156	Soybean	cytosol, nucleus, vacuole	25.43	26.75
CDY26286	Canola	cytosol, nucleus, vacuole	24.69	26.74
Bra025034.1-P	Field mustard	cytosol	24.69	26.74
Bra032364.1-P	Field mustard	cytosol, nucleus, vacuole	24.69	26.74
PGSC0003DMT400049024	Potato	cytosol	25.19	26.22
PGSC0003DMT400054525	Potato	cytosol	23.46	25.89
Solyc08g048430.2.1	Tomato	cytosol	20.74	25.77
Zm00001d028957_P001	Maize	cytosol	20.74	24.14
Zm00001d038537_P001	Maize	cytosol	20.25	23.16
Zm00001d010640_P001	Maize	cytosol, peroxisome, plastid	20.0	22.88
Zm00001d043125_P001	Maize	cytosol	19.26	22.29
CDX78848	Canola	cytosol	4.94	20.62
Zm00001d043016_P001	Maize	plastid	12.35	19.61
Zm00001d047573_P001	Maize	plastid	20.49	19.08
Zm00001d006501_P001	Maize	cytosol	9.14	16.97
PGSC0003DMT400002031	Potato	extracellular	5.68	14.38
PGSC0003DMT400054900	Potato	extracellular, plasma membrane	4.2	10.62

Protein Annotations

EnsemblPlants:Zm00001d006500_P001	EnsemblPlants:Zm00001d006500_T001	EnsemblPlantsGene:Zm00001d006500	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31215	PANTHER:PTHR31215:SF7
PFAM:PF12937	PFscan:PS50181	ProteinID:ONM24071.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0008458666
UniProt:A0A1D6EX51	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box protein

Coordinates

chr2:-:210088144..210091828

Molecular Weight (calculated)

41832.7 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.133

Length

405 amino acids

Sequence
(BLAST)

001: MSEDPAGSRR WRCDLGGDER WLSGAAGDDQ FDRLPDALLL VIFNRIGNVK ALGRCSLVSR RFHELVPLVD SVLVRVDCVI PDEPPSSSSS SSTPSSPTAS
101: VRARGVFSQI ARIVLGGIVK PIQALGQILS PANSASGFPA WSREARRLEA VHLEQVGAAL AERGHGLLHG PVEGAGAELV EVLPAGVADG LDDHERGAVD
201: PGAVRELQQR RVAQLHVAGG HLGSVGGGGG RGGERTVPEL PELVAPHAER ALPAGVRQRH PLQGGVLLDD LAKEVVPGGR GDEGADGPDD AQLEAAVGVQ
301: GLRDAAAVVV ARGGSGGGGV RRSRGRGAVH PGAAEDDAAL QRAAEHGLPP EHDAVVGAHV GDRELHPEAA DAAEVPQHLG GRVVLLRVLL RRRGLGVAAN
401: GFMLI

Best Arabidopsis Sequence Match ( AT5G46170.1 )
(BLAST)

001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF

Arabidopsis Description

F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.