Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022022.1-P | Field mustard | cytosol | 98.66 | 99.19 |
| CDX87738 | Canola | cytosol | 93.03 | 93.03 |
| CDX78848 | Canola | cytosol | 22.52 | 86.6 |
| CDX77641 | Canola | cytosol | 78.82 | 81.22 |
| CDY33458 | Canola | cytosol | 78.02 | 80.83 |
| AT5G46170.1 | Thale cress | cytosol, plastid | 81.23 | 76.71 |
| CDX99890 | Canola | cytosol, golgi, nucleus | 71.05 | 72.21 |
| CDY26286 | Canola | cytosol, nucleus, vacuole | 70.78 | 70.59 |
| VIT_10s0003g03880.t01 | Wine grape | cytosol | 73.73 | 68.92 |
| KRH11156 | Soybean | cytosol, nucleus, vacuole | 69.71 | 67.53 |
| KRH21091 | Soybean | cytosol | 69.97 | 67.44 |
| GSMUA_Achr5P02540_001 | Banana | cytosol | 50.94 | 56.72 |
| GSMUA_Achr4P31500_001 | Banana | cytosol | 50.4 | 56.46 |
| GSMUA_Achr4P22940_001 | Banana | cytosol | 56.03 | 56.03 |
| GSMUA_Achr2P17340_001 | Banana | cytosol | 53.35 | 55.9 |
| GSMUA_Achr7P07910_001 | Banana | cytosol | 57.37 | 55.87 |
| Os05t0510400-02 | Rice | cytosol | 60.86 | 55.1 |
| TraesCS3A01G296700.1 | Wheat | cytosol | 58.98 | 54.86 |
| TraesCS3B01G340400.1 | Wheat | cytosol | 58.18 | 53.98 |
| GSMUA_Achr11P... | Banana | extracellular | 10.99 | 53.95 |
| TraesCS3D01G306000.1 | Wheat | cytosol | 57.91 | 53.87 |
| Os01t0770400-01 | Rice | cytosol | 56.57 | 53.28 |
| Zm00001d043324_P001 | Maize | cytosol | 57.1 | 53.12 |
| Zm00001d000314_P001 | Maize | cytosol | 58.45 | 52.91 |
| OQU78753 | Sorghum | cytosol | 52.01 | 52.29 |
| Zm00001d012644_P001 | Maize | cytosol | 57.37 | 52.2 |
| Zm00001d010705_P001 | Maize | cytosol | 57.64 | 52.18 |
| TraesCS1A01G329300.1 | Wheat | cytosol, mitochondrion | 57.91 | 51.31 |
| TraesCS1D01G331400.1 | Wheat | cytosol | 58.45 | 51.05 |
| TraesCS1B01G342700.1 | Wheat | cytosol | 56.57 | 50.84 |
| EES03683 | Sorghum | cytosol | 56.84 | 50.72 |
| KXG22318 | Sorghum | cytosol | 57.64 | 50.59 |
| EES01093 | Sorghum | cytosol | 55.5 | 49.52 |
| CDX99469 | Canola | nucleus | 28.69 | 47.14 |
| GSMUA_Achr7P01170_001 | Banana | mitochondrion | 49.33 | 44.99 |
| HORVU3Hr1G075050.2 | Barley | plastid | 56.84 | 44.26 |
| HORVU1Hr1G077600.2 | Barley | plastid | 57.64 | 44.15 |
| GSMUA_Achr10P... | Banana | cytosol | 32.44 | 42.01 |
| CDX78847 | Canola | cytosol | 25.2 | 39.5 |
| CDY00435 | Canola | cytosol | 30.03 | 35.22 |
| CDY21348 | Canola | cytosol | 30.03 | 34.57 |
| CDY26850 | Canola | cytosol | 27.61 | 34.56 |
| CDY41488 | Canola | cytosol | 29.22 | 34.17 |
| CDX91668 | Canola | cytosol | 28.95 | 33.86 |
| CDY46634 | Canola | cytosol | 25.2 | 33.81 |
| CDX88418 | Canola | cytosol | 28.69 | 33.33 |
| CDX87476 | Canola | cytosol | 28.69 | 33.33 |
| CDY38235 | Canola | cytosol | 28.95 | 33.33 |
| CDY14629 | Canola | cytosol | 24.13 | 32.97 |
| Zm00001d006500_P001 | Maize | cytosol | 28.15 | 25.93 |
| CDY32130 | Canola | cytosol | 17.96 | 24.72 |
Protein Annotations
| EnsemblPlants:CDY43956 | EnsemblPlantsGene:GSBRNA2T00079337001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31215 | PANTHER:PTHR31215:SF2 | PFAM:PF12937 |
| PFscan:PS50181 | ProteinID:CDY43956 | ProteinID:CDY43956.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0004EF3A2E |
| UniProt:A0A078I2B8 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
BnaA02g24340DBnaA02g24340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2B8]
Coordinates
chrLK032575:-:14861..16372
Molecular Weight (calculated)
40584.6 Da
IEP (calculated)
6.316
GRAVY (calculated)
-0.068
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIPRSDPP PRIHPQPQPQ PLEQTDHFDR LPDSVLLLVL NRIADVKSLG RCRAVSRRFH SLVPQVENVV VRVDCVISDD DNSSLSSIKP PSAASSSFSA
101: VFSLVVGGIV KPLQALGQLL GTTSRSSSLS TSGEIEQGGV THHSPTQVLR NFDEILYLRI ELPSGELGID EGVLLKWRAE FGSTLDNCVI LGASSVIQPS
201: PMHISQTLEA PDASEDNGSI PESFYTNGGL KLRVVWTISS LIAASARHYL LQPIISEHKT LKSLVLTDSD GQGVLSMNKD QLEELRVKPL LASSASKRTL
301: VPALNMRLWY APSLVLPDGT VLKGATLVAI RPSESNKDVS DANWVSSAFE EPYETAAKML VKRRTYCLEM NSF
101: VFSLVVGGIV KPLQALGQLL GTTSRSSSLS TSGEIEQGGV THHSPTQVLR NFDEILYLRI ELPSGELGID EGVLLKWRAE FGSTLDNCVI LGASSVIQPS
201: PMHISQTLEA PDASEDNGSI PESFYTNGGL KLRVVWTISS LIAASARHYL LQPIISEHKT LKSLVLTDSD GQGVLSMNKD QLEELRVKPL LASSASKRTL
301: VPALNMRLWY APSLVLPDGT VLKGATLVAI RPSESNKDVS DANWVSSAFE EPYETAAKML VKRRTYCLEM NSF
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
Arabidopsis Description
F-box protein At5g46170 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK5]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.